interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF PYRENE- AND PHENANTHRENE-MODIFIED DNA IN COMPLEX WITH THE BPUJ1 ENDONUCLEASE BINDING DOMAIN
(Restriction endonuclease R.BpuJI)
referenceLangenegger et al. 'Nucleic 44 7079 2016
sourceBacillus pumilus
experimentX-ray (resolution=2.67, R-factor=0.203)
reference complex2vla_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKKTNEKETSQ

Estimated binding specificities ?

readout + contactlogo
# IC=6.101 IC/col=0.872 n_of_columns=7 specificity:   
A |  38   1   3   0   5   0  20
C |  19  94  93  93   6   1   6
G |  19   0   0   1  80   1  65
T |  20   1   0   2   5  94   5
scan!

home
updated Thu Sep 12 21:26:18 2024