interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF PYRENE- AND PHENANTHRENE-MODIFIED DNA IN COMPLEX WITH THE BPUJ1 ENDONUCLEASE BINDING DOMAIN
(Restriction endonuclease R.BpuJI)
referenceLangenegger et al. 'Nucleic 44 7079 2016
sourceBacillus pumilus
experimentX-ray (resolution=2.67, R-factor=0.203)
reference complex2vla_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKKTNEKETSQ

Estimated binding specificities ?

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# IC=5.949 IC/col=0.850 n_of_columns=7 specificity:   
A |   5  94   5   5   1   0  15
C |  63   0  79   0   0   0  21
G |   7   1   5  90  93  94  21
T |  21   1   7   1   2   2  39
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updated Sat Aug 2 08:51:16 2025