interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF PYRENE- AND PHENANTHRENE-MODIFIED DNA IN COMPLEX WITH THE BPUJ1 ENDONUCLEASE BINDING DOMAIN
(Restriction endonuclease R.BpuJI)
referenceLangenegger et al. 'Nucleic 44 7079 2016
sourceBacillus pumilus
experimentX-ray (resolution=2.67, R-factor=0.203)
reference complex2vla_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKKTNEKETSQ

Estimated binding specificities ?

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# IC=6.096 IC/col=0.871 n_of_columns=7 specificity:   
A |  38   2   2   1   5   0  20
C |  19  94  93  93   5   2   6
G |  19   0   0   1  80   0  65
T |  20   0   1   1   6  94   5
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updated Sun Jun 28 13:04:25 2026