interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF PYRENE- AND PHENANTHRENE-MODIFIED DNA IN COMPLEX WITH THE BPUJ1 ENDONUCLEASE BINDING DOMAIN
(Restriction endonuclease R.BpuJI)
referenceLangenegger et al. 'Nucleic 44 7079 2016
sourceBacillus pumilus
experimentX-ray (resolution=1.88, R-factor=0.171)
reference complex2vla_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKNKTNTEKESQ

Estimated binding specificities ?

readout + contactlogo
# IC=7.140 IC/col=1.020 n_of_columns=7 specificity:   
A |  13  96   0   0   0   0  13
C |  57   0  96   0   0   0  13
G |  13   0   0  96  96  96  16
T |  13   0   0   0   0   0  54
scan!

home
updated Thu Sep 12 21:26:30 2024