5hod_AD : 3D-footprint complex

structure name	STRUCTURE OF LHX4 TRANSCRIPTION FACTOR COMPLEXED WITH DNA
reference	Morgunova et al. Science 356 ? 2017
source	Homo sapiens
experiment	X-ray (resolution=2.68, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5hod_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5hod_A interface=6,48,51,52, gakrpRttitakqletlknayknspkparhvreqlssetgldmrvvqVwfQNrrakekrlk > 5hod_D interface=3,41,45,48,49,51, rpRttitakqletlknayknspkparhvreqlssetgldmRvvqVwfQNrRakekrlk
interface signature	RVQN/RRVQNR

Estimated binding specificities ?

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# IC=12.050 IC/col=0.753 n_of_columns=16

specificity:

A |  12  24  66   0   0  96   0  24  24  12   4  24  88   0   0   0
C |  14  24  10   0   0   0  96  24  24  70   4  24   0   0   4   0
G |  12  24  12   0   0   0   0  24  24  10   5  24   4   0   4  96
T |  58  24   8  96  96   0   0  24  24   4  83  24   4  96  88   0

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updated Tue Sep 10 04:40:31 2024