5hod_AD : 3D-footprint complex

structure name	STRUCTURE OF LHX4 TRANSCRIPTION FACTOR COMPLEXED WITH DNA
reference	Morgunova et al. Science 356 ? 2017
source	Homo sapiens
experiment	X-ray (resolution=2.68, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5hod_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5hod_A interface=6,48,51,52, gakrpRttitakqletlknayknspkparhvreqlssetgldmrvvqVwfQNrrakekrlk > 5hod_D interface=3,41,45,48,49,51, rpRttitakqletlknayknspkparhvreqlssetgldmRvvqVwfQNrRakekrlk
interface signature	RVQN/RRVQNR

Estimated binding specificities ?

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# IC=11.809 IC/col=0.738 n_of_columns=16

specificity:

A |   0  84  92   4  24  87  12  24  24   0   0  96  96  12  24  58
C |  96   4   0   0  24   1   8  24  24   0   0   0   0   8  24  12
G |   0   4   0   1  24   4  62  24  24  96   0   0   0  10  24  12
T |   0   4   4  91  24   4  14  24  24   0  96   0   0  66  24  14

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updated Thu Jun 25 04:41:49 2026