5hod_A : 3D-footprint complex

structure name	STRUCTURE OF LHX4 TRANSCRIPTION FACTOR COMPLEXED WITH DNA (LIMhomeobox protein Lhx4)
reference	Morgunova et al. Science 356 ? 2017
source	Homo sapiens
experiment	X-ray (resolution=2.68, R-factor=0.235)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	5hod_AD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5hod_A interface=6,48,51,52, gakrpRttitakqletlknayknspkparhvreqlssetgldmrvvqVwfQNrrakekrlk
interface signature	RVQN

Estimated binding specificities ?

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# IC=5.463 IC/col=0.780 n_of_columns=7

specificity:

A |  21  24  42   0   0  96   0
C |  21  24  23   0   0   0  96
G |  21  24  21   0   0   0   0
T |  33  24  10  96  96   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RARA--IAQTNA----   L                         +-5ego_B    
                         +---------------------1 
  --RT--NT--NAIARG   L   !                     +-1b72_B    
                       --3 
  RCRT--VTQTNA--RG   L   !                   +---8ejp_B    
                         +-------------------2 
  ----RTNT--NAIARG   L                       +---4cyc_B

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updated Mon Jun 29 19:59:17 2026