interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF T. THERMOPHILUS TTHB099 CLASS II TRANSCRIPTION ACTIVATION COMPLEX: TAP-RPO
referenceEbright et al. Science 352 1330 2016
experimentX-ray (resolution=4.41, R-factor=?)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex5i2d_R
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRKWNRPYLRIDRRRFLEDV/APTA/DVRLILENRLFERFSTYTWWRQNRVHEINSREVTIYLRER/IRESSK/IRESK

Estimated binding specificities ?

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# IC=38.030 IC/col=0.731 n_of_columns=52 specificity:   
A |  96   0   0   0   0  78   0   0   0   0  96  96   0  96  96   0  24  24  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24   0  84   3   0   0   0   0  96  15  24  24  24  24   6   6   0  78   0  96
C |   0   0   0  96   0   6   0   0   0   0   0   0   0   0   0  96  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   3  87   0   0   0   0   0  15  24  24  24  24  78   6  96   6  96   0
G |   0  96   0   0  96   6  96  96  96   0   0   0   0   0   0   0  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  96   6   3   0  96   0  96   0  51  24  24  24  24   6   6   0   6   0   0
T |   0   0  96   0   0   6   0   0   0  96   0   0  96   0   0   0  24  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   3   3  96   0  96   0   0  15  24  24  24  24   6  78   0   6   0   0
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updated Tue Sep 10 04:44:33 2024