5jjv_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF XERH SITE-SPECIFIC RECOMBINASE BOUND TO PALINDROMIC DIFH SUBSTRATE: POST-CLEAVAGE COMPLEX
reference	Barabas et al. Elife 5 ? 2016
experiment	X-ray (resolution=2.40, R-factor=0.196)
structural superfamily	DNA breaking-rejoining enzymes;
sequence family	Phage integrase family;
reference complex	5jk0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jjv_B interface=66,71,74,75,76,124,125,128,131,234,279,280,281,282,284,285, smkhpleelkdptenlllwigrflrykctslsnsqvkdqnkvfeclnelnqacsssqlekvckkaRnaglLgiNTYalpllkfheyfskarliterlafnslknidevmlaeflsvytgglslATkkNyrIallglfsyidkqnqdeneksyiynitlknisgnklpthlnneelekflesidkiemsakvrarnrllikiivftgmrsnealqlkikdftlengcytilikgKgdkyravmlkafhiesllkewlierelypvkndllfcnqkgsalTQAYlYKqveriinfaglrrekngahmlrhsfatllyqkrhdlilvqealghaslntsriythfdkqrleeaasiwee
interface signature	RLNTYATNIKTQAYYK

Estimated binding specificities ?

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# IC=10.984 IC/col=1.098 n_of_columns=10

specificity:

A |   0   0   0   0   0  96  16  82  96  13
C |   0   0   0   0  96   0  13   0   0  82
G |   0   0   0  14   0   0  13  14   0   1
T |  96  96  96  82   0   0  54   0   0   0

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updated Fri Jan 9 03:48:28 2026