5jjv_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF XERH SITE-SPECIFIC RECOMBINASE BOUND TO PALINDROMIC DIFH SUBSTRATE: POST-CLEAVAGE COMPLEX
reference	Barabas et al. Elife 5 ? 2016
experiment	X-ray (resolution=2.40, R-factor=0.196)
structural superfamily	DNA breaking-rejoining enzymes;
sequence family	Phage integrase family;
reference complex	5jk0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jjv_B interface=66,71,74,75,76,124,125,128,131,234,279,280,281,282,284,285, smkhpleelkdptenlllwigrflrykctslsnsqvkdqnkvfeclnelnqacsssqlekvckkaRnaglLgiNTYalpllkfheyfskarliterlafnslknidevmlaeflsvytgglslATkkNyrIallglfsyidkqnqdeneksyiynitlknisgnklpthlnneelekflesidkiemsakvrarnrllikiivftgmrsnealqlkikdftlengcytilikgKgdkyravmlkafhiesllkewlierelypvkndllfcnqkgsalTQAYlYKqveriinfaglrrekngahmlrhsfatllyqkrhdlilvqealghaslntsriythfdkqrleeaasiwee
interface signature	RLNTYATNIKTQAYYK

Estimated binding specificities ?

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# IC=10.551 IC/col=1.055 n_of_columns=10

specificity:

A |   0   0   0   9   0  96   9  86  96   9
C |   0   0   0   2  96   0   9   0   0  67
G |   0   0   0   9   0   0   9   9   0   9
T |  96  96  96  76   0   0  69   1   0  11

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updated Thu Sep 12 21:36:18 2024