5jub_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF COMR FROM S.THERMOPHILUS IN COMPLEX WITH DNA AND ITS SIGNALLING PEPTIDE COMS.
reference	Li de la Sierra-Gallay et al. 'PLoS 12 e1005980 2016
source	Streptococcus thermophilus LMD-9
experiment	X-ray (resolution=2.57, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	5jub_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jub_A interface=31,33,34,37,43, lkdsiglriktererqqmsrevlcldgaelTvRQliRiekgeSlpsldrlsyiakrlgksmtelldqdnitipdeyyemknrlikfptyrnpdrikskltlieevyekffdilpeeelltldilenilsftsweespkveeiyedlfeqvkrkrkfstndllvidyyffhlygrkqydkklferiikrvlnqeiwtddvynivlfndlmaiaalkifhnsfsdfltvvdkalavieksqlysykpsvfvlkakyellhkenkkeaaenydkaivfasvledsvleesikagkladglg > 5jub_B interface=28,30,31,33,34,40, siglriktererqqmsrevlcldgaelTvRQlIRiekgeSlpsldrlsyiakrlgksmtelldqdnitipdeyyemknrlikfptyrnpdrikskltlieevyekffdilpeeelltldilenilsftsweespkveeiyedlfeqvkrkrkfstndllvidyyffhlygrkqydkklferiikrvlnqeiwtddvynivlfndlmaiaalkifhnsfsdfltvvdkalavieksqlysykpsvfvlkakyellhkenkkeaaenydkaivfasvledsvleesikagkladgl
interface signature	TRQRS/TRQIRS

Estimated binding specificities ?

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# IC=10.523 IC/col=0.752 n_of_columns=14

specificity:

A |  72   0  69   0  96  24  24  24  24   0   0   8   0  87
C |   8   0  11  96   0  24  24  24  24   0   0  11  96   9
G |   8  96   8   0   0  24  24  24  24   0  96   8   0   0
T |   8   0   8   0   0  24  24  24  24  96   0  69   0   0

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updated Tue Sep 10 05:53:16 2024