5jub_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF COMR FROM S.THERMOPHILUS IN COMPLEX WITH DNA AND ITS SIGNALLING PEPTIDE COMS.
reference	Li de la Sierra-Gallay et al. 'PLoS 12 e1005980 2016
source	Streptococcus thermophilus LMD-9
experiment	X-ray (resolution=2.57, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jub_A interface=31,33,34,37,43, lkdsiglriktererqqmsrevlcldgaelTvRQliRiekgeSlpsldrlsyiakrlgksmtelldqdnitipdeyyemknrlikfptyrnpdrikskltlieevyekffdilpeeelltldilenilsftsweespkveeiyedlfeqvkrkrkfstndllvidyyffhlygrkqydkklferiikrvlnqeiwtddvynivlfndlmaiaalkifhnsfsdfltvvdkalavieksqlysykpsvfvlkakyellhkenkkeaaenydkaivfasvledsvleesikagkladglg > 5jub_B interface=28,30,31,33,34,40, siglriktererqqmsrevlcldgaelTvRQlIRiekgeSlpsldrlsyiakrlgksmtelldqdnitipdeyyemknrlikfptyrnpdrikskltlieevyekffdilpeeelltldilenilsftsweespkveeiyedlfeqvkrkrkfstndllvidyyffhlygrkqydkklferiikrvlnqeiwtddvynivlfndlmaiaalkifhnsfsdfltvvdkalavieksqlysykpsvfvlkakyellhkenkkeaaenydkaivfasvledsvleesikagkladgl
interface signature	TRQRS/TRQIRS

Estimated binding specificities ?

readout + contact

# IC=10.669 IC/col=0.762 n_of_columns=14

specificity:

A |   0   0  69   0  96  24  24  24  24   0   0   9   0   9
C |   0   0   9  96   0  24  24  24  24   0   0  11  96   9
G |   0  96   9   0   0  24  24  24  24   0  96   9   0  11
T |  96   0   9   0   0  24  24  24  24  96   0  67   0  67

scan!

home
updated Sat Dec 14 04:09:05 2024