5jub_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF COMR FROM S.THERMOPHILUS IN COMPLEX WITH DNA AND ITS SIGNALLING PEPTIDE COMS. (Transcriptional regulator)
reference	Li de la Sierra-Gallay et al. 'PLoS 12 e1005980 2016
source	Streptococcus thermophilus LMD-9
experiment	X-ray (resolution=2.57, R-factor=0.229)
structural superfamily	lambda repressor-like DNA-binding domains;
multimeric complexes	5jub_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jub_B interface=28,30,31,33,34,40, siglriktererqqmsrevlcldgaelTvRQlIRiekgeSlpsldrlsyiakrlgksmtelldqdnitipdeyyemknrlikfptyrnpdrikskltlieevyekffdilpeeelltldilenilsftsweespkveeiyedlfeqvkrkrkfstndllvidyyffhlygrkqydkklferiikrvlnqeiwtddvynivlfndlmaiaalkifhnsfsdfltvvdkalavieksqlysykpsvfvlkakyellhkenkkeaaenydkaivfasvledsvleesikagkladgl
interface signature	TRQIRS

Estimated binding specificities ?

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# IC=4.046 IC/col=0.809 n_of_columns=5

specificity:

A |   0  11   9   9  96
C |   0   9   9  69   0
G |   0  67   9   9   0
T |  96   9  69   9   0

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Dendrogram of similar interfaces ?

matrix format

  
  ------TT--RGQTITRG----ST----   L                 +-----------5jub_B    
                                     +-------------3 
  ----CT--KT----STRC----------   L   !             !          +6w1f_A    
                                     !             +----------2 
  ------SGKGSCQTST------------   L   !                        +6w1a_A    
                                   --5 
  --QT--STNTVTATSTQTRTETTT----   L   !                         +2r1j_L    
                                     !        +----------------1 
  ----RTTT--AT--STRG----TT----   L   +--------4                +6chv_D    
                                              ! 
  RT--------RG----NT----ETRTYA   L            +----------------7f9h_B

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updated Fri Sep 13 19:57:29 2024