5jvt_AD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG
reference	Tsodikov et al. 'Nucleic 44 8990 2016
source	Homo sapiens
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5jvt_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jvt_A interface=55,56,59,62,63,67, gqiqlwqfllellsdsanascitwegtngefkmtdpdevarrwgerkskpnmnyDKlsRalRYyydKnimtkvhgkryaykfdfhgiaqalqphpt > 5jvt_D interface=55,56,59,60,62,63,67, gqiqlwqfllellsdsanascitwegtngefkmtdpdevarrwgerkskpnmnyDKlsRAlRYyydKnimtkvhgkryaykfdfhgiaqalqp
interface signature	DKRRYK/DKRARYK

Estimated binding specificities ?

readout + contact

# IC=12.255 IC/col=0.766 n_of_columns=16

specificity:

A |  10   0   0   0   0  24  24  10   5  24  24   0   0   0  96  69
C |  10   0  96  96   0  24  24  58  21  24  24  96   0   0   0  10
G |  12   0   0   0  96  24  24  12  64  24  24   0  96  96   0   5
T |  64  96   0   0   0  24  24  16   6  24  24   0   0   0   0  12

scan!

home
updated Thu Jun 25 06:07:41 2026