5jvt_AD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG
reference	Tsodikov et al. 'Nucleic 44 8990 2016
source	Homo sapiens
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4iri_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jvt_A interface=55,56,59,62,63,67, gqiqlwqfllellsdsanascitwegtngefkmtdpdevarrwgerkskpnmnyDKlsRalRYyydKnimtkvhgkryaykfdfhgiaqalqphpt > 5jvt_D interface=55,56,59,60,62,63,67, gqiqlwqfllellsdsanascitwegtngefkmtdpdevarrwgerkskpnmnyDKlsRAlRYyydKnimtkvhgkryaykfdfhgiaqalqp
interface signature	DKRRYK/DKRARYK

Estimated binding specificities ?

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# IC=12.053 IC/col=0.753 n_of_columns=16

specificity:

A |  10   0   0   0   0  24  24   8  12  24  24   0   0   0  96  68
C |  16   0  96  96   0  24  24  47  26  24  24  96   0   0   0  12
G |   8   0   0   0  96  24  24  33  54  24  24   0  96  96   0  12
T |  62  96   0   0   0  24  24   8   4  24  24   0   0   0   0   4

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updated Tue Sep 10 05:53:33 2024