5jvt_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG (Friend leukemia integration 1 transcription factor)
reference	Tsodikov et al. 'Nucleic 44 8990 2016
source	Homo sapiens
experiment	X-ray (resolution=3.10, R-factor=0.196)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Etsdomain;
multimeric complexes	5jvt_AD 6vg8_AD 6vgd_AD
redundant complexes	5e8i_A 6vg2_D 6vg8 6vgd
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jvt_A interface=55,56,59,62,63,67, gqiqlwqfllellsdsanascitwegtngefkmtdpdevarrwgerkskpnmnyDKlsRalRYyydKnimtkvhgkryaykfdfhgiaqalqphpt
interface signature	DKRRYK

Estimated binding specificities ?

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# IC=4.638 IC/col=0.928 n_of_columns=5

specificity:

A |  16   0   0   0  16
C |  16   0  96  96   0
G |  16   0   0   0  64
T |  48  96   0   0  16

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Dendrogram of similar interfaces ?

matrix format

  
  --DCKT--RGST--RGYC----   L         +-----------------------------4uno_A    
                                   +-1 
  --DCKT--RG----RGYA----   L     +-2 +-----------------------------3zp5_A    
                                 ! ! 
  --------------RG--NG--       +-3 +-----------------------------7dci_A    
                               ! ! 
  RT------------------YG   L --4 +-----------------------------5vfx_A    
                               ! 
  ------DCST--RGHGNTST--   L   +-----------------------------7yzb_A

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updated Mon Jun 29 20:17:31 2026