| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG (Friend leukemia integration 1 transcription factor) |
| reference | Tsodikov et al. 'Nucleic 44 8990 2016 |
| source | Homo sapiens |
| experiment | X-ray (resolution=3.10, R-factor=0.196) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Etsdomain; |
| multimeric complexes | 5jvt_AD 6vg8_AD 6vgd_AD |
| redundant complexes |  6vg2_D
6vg8
6vgd
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | DRRY |
Estimated binding specificities ?
| readout + contact |  |
A | 16 0 0 0 16 C | 16 0 96 96 0 G | 16 0 0 0 64 T | 48 96 0 0 16scan! |
Dendrogram of similar interfaces ?
matrix format------------DCKT--RG--RGYA----KA L +5jvt_A +--------------4 ------------DCKT--RGATRCYA------ L ! ! +5e8i_D ! +-1 --------------KT--RG--RAYA------ L ! +6vge_A +-8 ------------DCKT--RGSTRGYA------ L ! ! +4bnc_A ! ! +-----------2 --------------KT--RG--RGYA------ L ! +---6 +3wts_C +-9 ! ------------------TT--CT--NGKG-- L ! ! +-----------7oot_B ! ! --------------KT--RG--RGYA------ L +-10 ! +-------------4lg0_B ! ! +---7 NC----------------TT--CT--NGKG-- L ! ! +-------------7rh2_B +-11 ! ----RC-------------------------- ! ! +------------------7cow_T +-12 ! ------LTNTHG--RTYTPT------------ L ! ! +---------------------6qil_A ! ! --RC---------------------------- ! +----------------------6l9z_S -13 ------------DCKT--RG--RGYA------ L ! +1dux_F ! +----------3 ------------ECKT--RGATRGNT------ L +-------------5 +1pue_E ! --------------------NTCT--NGST-- L +----------1if1_B |
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updated Thu Dec 22 21:47:05 2022