5k1y_ABCDEF : 3D-footprint complex

structure name	P2(1) STRUCTURE OF PNOB8 ASPA-DNA COMPLEX
reference	'To ? ? ? X-RAY DIFFRACTION
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=2.97, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k1y_A interface=36,37,38,41,44, tdkyifltprayiivhllkvgkakaseisentqipYQTviQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k1y_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k1y_C interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k1y_D interface=2,40,41,42,45, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k1y_E interface=40,41,42, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviqnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k1y_F interface=2,40,41,42,45, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	YQTQR/KYQTIQR/YQTQ/KYQTQ/YQT/KYQTQ

Estimated binding specificities ?

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# IC=30.087 IC/col=1.157 n_of_columns=26

specificity:

A |   0   5  88  67   2   3   0   0  90   0   0  88  87   1   0  90   0   0   1  96   0   1   0   0   1   0
C |  96   4   1   2  94   3   0  96   1  96   0   1   7  90   0   1  96   0  90   0   0   4   0  96   0   0
G |   0  80   4  26   0   3   0   0   4   0  96   1   1   4   0   4   0  96   1   0  96   3   0   0   9   1
T |   0   7   3   1   0  87  96   0   1   0   0   6   1   1  96   1   0   0   4   0   0  88  96   0  86  95

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updated Tue Sep 10 05:53:44 2024