5k1y_ABCDEF : 3D-footprint complex

structure name	P2(1) STRUCTURE OF PNOB8 ASPA-DNA COMPLEX
reference	'To ? ? ? X-RAY DIFFRACTION
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=2.97, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k1y_A interface=36,37,38,41,44, tdkyifltprayiivhllkvgkakaseisentqipYQTviQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k1y_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k1y_C interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k1y_D interface=2,40,41,42,45, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k1y_E interface=40,41,42, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviqnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k1y_F interface=2,40,41,42,45, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	YQTQR/KYQTIQR/YQTQ/KYQTQ/YQT/KYQTQ

Estimated binding specificities ?

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# IC=30.480 IC/col=1.172 n_of_columns=26

specificity:

A |   0   3  90  74   1   1   0   0  93   0   0  86  78   1   0  90   0   0   1  96   0   1   0   0   0   0
C |  96   3   1   2  94   1   0  96   1  96   0   6  10  90   0   4  96   0  90   0   0   1   0  96   0   0
G |   0  81   4  17   1   1   0   0   1   0  96   1   7   4   0   1   0  96   1   0  96   1   0   0   9   1
T |   0   9   1   3   0  93  96   0   1   0   0   3   1   1  96   1   0   0   4   0   0  93  96   0  87  95

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updated Wed Jul 30 09:34:29 2025