| structure name | STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDNG PROTEIN- CENTROMERE COMPLEX (ASPA) |
| reference | Science 349 1120 2015 X-RAY DIFFRACTION |
| source | SULFOLOBUS SP. NOB8H2 |
| experiment | X-ray (resolution=2.65, R-factor=0.262) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| multimeric complexes | 5k1y_ABCDEF 5k5o_ABCD 5k5q_ABCDEF 5k5r_ABCDEF 5kk1_ABCDEF |
| redundant complexes | 5k1y_E
5k5o_B
5k5r_E
 5kk1_D
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KYQTQ |
Estimated binding specificities ?
| contact |  |
A | 13 96 0 13 0 0 0 C | 16 0 0 13 96 0 96 G | 13 0 0 54 0 0 0 T | 54 0 96 16 0 96 0scan! |
Dendrogram of similar interfaces ?
matrix format----ET--RGTCTG--STRG------------------KT---- L +-----------------------------6q2b_B +-12 ------STKGSTVA--STNT----KTRC----------RT---- L +-13 +-----------------------------7dvv_A ! ! --NT--KTPTQGSC--NTKA--------------------RT-- +-14 +-----------------------------5bmz_B ! ! ------TT--PTTC--STNT------------------RT---- L +-15 +-----------------------------4lln_I ! ! ----NGLTKTPTST--TT--------RT----------RT---- L ! +-----------------------------7el3_B ! ------NTHG--RT--YTPT------------------RT---- L ! +----------6qil_A ! +---------1 ------------------NAST--HT----STLT---------- L ! +--3 +----------7cby_C ! ! ! RT--LTNTHGTA----YTRG----------------KG--QA-- ! +-4 +--------------------2efw_A ! ! ! ------------------------------------------NG ! +-5 +-----------------------7k63_U +-16 ! ! ------------QTNAST--RGHTNT--STLA------------ L ! ! +-6 +-------------------------2hdc_A ! ! ! ! ------ST--PTTC--STQC------RA---------------- L ! ! +-7 +--------------------------1ddn_B ! ! ! ! --RC--------------------------------------SG ! ! +-8 +--------------------------7cow_T ! ! ! ! ----------------NAST--RTHT----ST------------ ! ! +-9 +---------------------------3co7_C +-17 ! ! ! --RA--ST--ECTT--RAKA------------------------ ! ! ! +-10 +---------------------------7oz3_B ! ! ! ! ! --ETNTSCRGHC----RT-------------------------- ! ! +-11 +----------------------------5d4s_B ! ! ! ----------KGTA----TA------RG---------------- L +-18 ! ! +---------------1xsd_A ! ! ! +------------2 ----------------NAST--RGHTNT--STLT---------- L ! ! ! +---------------7fj2_B ! ! ! ------STQTPTPG--TTRG----------------HT------ L +-19 ! +-----------------------------5xxp_A ! ! ! ------------------RC----YG--------KT-------- ! ! +-----------------------------2acj_B -20 ! ------------------------YGRG---------------- ! +-----------------------------4wcg_A ! ------HT--STAT--STRG------------------------ L +-----------------------------5lej_A |
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updated Tue Dec 19 10:48:45 2023