5k5o_ABCD : 3D-footprint complex

structure name	STRUCTURE OF ASPA-26MER DNA COMPLEX
reference	Science 349 1120 2015
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k5o_A interface=45, gkistdkyifltprayiivhllkvgkakaseisentqipyqtviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5o_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5o_C interface=38,39,42, stdkyifltprayiivhllkvgkakaseisentqipyQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5o_D interface=2,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipyQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	Q/KYQTIQR/QTQ/KQTIQR

Estimated binding specificities ?

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# IC=17.775 IC/col=0.773 n_of_columns=23

specificity:

A |   0   0  24  24   5   0   0   0   6   0   0  24  24  24  24  24   5   0   0  80   5   0  80
C |  96   0  24  24   5   0   0  96   5   0   0  24  24  24  24  24   6   0  96   5  81   0   5
G |   0  96  24  24  80   0   0   0  80   0  96  24  24  24  24  24  80   0   0   5   5  96   5
T |   0   0  24  24   6  96  96   0   5  96   0  24  24  24  24  24   5  96   0   6   5   0   6

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updated Tue Sep 10 05:54:50 2024