5k5q_ABCDEF : 3D-footprint complex

structure name	STRUCTURE OF ASPA-DNA COMPLEX: NOVEL CENTROMERE BINDNG PROTEIN- CENTROMERE COMPLEX
reference	Science 349 1120 2015 X-RAY DIFFRACTION
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k5q_A interface=37,38,39,41, stdkyifltprayiivhllkvgkakaseisentqipYQTvIqnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5q_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5q_C interface=2,40,41,42,45, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5q_D interface=2,40,41,42,45, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvev > 5k5q_E interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5q_F interface=2,40,41,42,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	YQTI/KYQTIQR/KYQTQ/KYQTQ/YQTQ/KYQTQR

Estimated binding specificities ?

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# IC=33.033 IC/col=1.180 n_of_columns=28

specificity:

A |  75  96   0   0   0   0   0   0   0  96   0   0   7  24  96  96   0   0   0   0  96   0  96   0   9  96   0  75
C |   7   0   0   0   0  96   0  96   0   0   0   0   7  24   0   0   0  96   0  96   0   0   0   0  73   0   0   7
G |   7   0   0   0  96   0   0   0   0   0   0  96   7  24   0   0   0   0  96   0   0  96   0  96   7   0   0   7
T |   7   0  96  96   0   0  96   0  96   0  96   0  75  24   0   0  96   0   0   0   0   0   0   0   7   0  96   7

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updated Mon Jan 5 18:48:12 2026