5k5r_ABCDEF : 3D-footprint complex

structure name	ASPA-32MER DNA,CRYSTAL FORM 2
reference	Science 349 1120 2015 X-RAY DIFFRACTION
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k5r_A interface=37,38,39,41,42,45, stdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5r_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5k5r_C interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5r_D interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvev > 5k5r_E interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5k5r_F interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	YQTIQR/KYQTIQR/YQTQ/KYQTIQR/YQTQ/KYQTIQR

Estimated binding specificities ?

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# IC=33.552 IC/col=1.157 n_of_columns=29

specificity:

A |  84   1   0  96   1   0   1   0   0   0  88   0   0  96   3   1   1  80   0  96   3  96   0  90   0   0  82  88  96
C |   3  12   0   0   4   0  93   0  96   0   3   0   0   0   5   1   1   8  96   0   4   0   0   1   0  19   5   3   0
G |   4   3   0   0   1  96   1   0   0   0   4   0  96   0   0   4   0   7   0   0   3   0  96   4  96   1   3   1   0
T |   5  80  96   0  90   0   1  96   0  96   1  96   0   0  88  90  94   1   0   0  86   0   0   1   0  76   6   4   0

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updated Tue Sep 10 05:55:49 2024