5kbj_ABG : 3D-footprint complex

structure name	STRUCTURE OF REP-DNA COMPLEX
reference	'Proc. 111 9121 2014 X-RAY DIFFRACTION
source	Staphylococcus aureus
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5kbj_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kbj_A interface=76,77,80,81,96,99, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEklTKikkglendglliqkRrgLnkpnilylmkpivterdiykiekeendvepy > 5kbj_B interface=76,77,96,99,100, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEkltkikkglendglliqkRrgLNkpnilylmkpivterdiykiekeendvepy > 5kbj_G interface= qnqyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnCKkekltkikkglendglliQkrRGlnkpnilylmkpivterdiykiekeendv
interface signature	KETKRL/KERLN/CKQRG

Estimated binding specificities ?

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# IC=14.862 IC/col=0.619 n_of_columns=24

specificity:

A |   0  24  13   0  24  24   0   0  24  24  24  24  24  24   0  96  46   3   0  24   0   0   3   0
C |   6  24  56   0  24  24  96   0  24  24  24  24  24  24   0   0  13  82   0  24  92   0   0   9
G |  90  24  11  96  24  24   0  96  24  24  24  24  24  24  96   0  21   8   0  24   4   0  92  84
T |   0  24  16   0  24  24   0   0  24  24  24  24  24  24   0   0  16   3  96  24   0  96   1   3

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updated Tue Sep 10 05:56:49 2024