5kbj_ABG : 3D-footprint complex

structure name	STRUCTURE OF REP-DNA COMPLEX
reference	'Proc. 111 9121 2014 X-RAY DIFFRACTION
source	Staphylococcus aureus
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5kbj_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kbj_A interface=76,77,80,81,96,99, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEklTKikkglendglliqkRrgLnkpnilylmkpivterdiykiekeendvepy > 5kbj_B interface=76,77,96,99,100, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEkltkikkglendglliqkRrgLNkpnilylmkpivterdiykiekeendvepy > 5kbj_G interface= qnqyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnCKkekltkikkglendglliQkrRGlnkpnilylmkpivterdiykiekeendv
interface signature	KETKRL/KERLN/CKQRG

Estimated binding specificities ?

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# IC=13.784 IC/col=0.574 n_of_columns=24

specificity:

A |   8   2  96   0  24  88   8  13   0   0  24  24  24  24  24  24   0   0  24  24   0  10  24   8
C |  75  88   0   0  24   2   9  12   0  96  24  24  24  24  24  24  96   0  24  24  96  10  24  72
G |   8   4   0  96  24   2  74  10   0   0  24  24  24  24  24  24   0  96  24  24   0  66  24   8
T |   5   2   0   0  24   4   5  61  96   0  24  24  24  24  24  24   0   0  24  24   0  10  24   8

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updated Wed Jul 30 09:37:46 2025