5kbj_ABG : 3D-footprint complex

structure name	STRUCTURE OF REP-DNA COMPLEX
reference	'Proc. 111 9121 2014 X-RAY DIFFRACTION
source	Staphylococcus aureus
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5kbj_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kbj_A interface=76,77,80,81,96,99, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEklTKikkglendglliqkRrgLnkpnilylmkpivterdiykiekeendvepy > 5kbj_B interface=76,77,96,99,100, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEkltkikkglendglliqkRrgLNkpnilylmkpivterdiykiekeendvepy > 5kbj_G interface= qnqyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnCKkekltkikkglendglliQkrRGlnkpnilylmkpivterdiykiekeendv
interface signature	KETKRL/KERLN/CKQRG

Estimated binding specificities ?

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# IC=14.668 IC/col=0.611 n_of_columns=24

specificity:

A |   4  24   8   0  24  24   0   0  24  24  24  24  24  24   0  96  65   2   2  24   2   0   2   0
C |   5  24  63   0  24  24  96   0  24  24  24  24  24  24   0   0   8  87   5  24  87   0   2   4
G |  85  24  15  96  24  24   0  96  24  24  24  24  24  24  96   0  13   5   2  24   5   0  90  90
T |   2  24  10   0  24  24   0   0  24  24  24  24  24  24   0   0  10   2  87  24   2  96   2   2

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updated Mon Jan 5 18:50:33 2026