5kbj_B : 3D-footprint complex

structure name	STRUCTURE OF REP-DNA COMPLEX (Replication initiator A, N-terminal)
reference	'Proc. 111 9121 2014 X-RAY DIFFRACTION
source	Staphylococcus aureus
experiment	X-ray (resolution=3.09, R-factor=0.231)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Replication initiator protein A RepA Nter;
multimeric complexes	5kbj_ABG
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kbj_B interface=76,77,96,99,100, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEkltkikkglendglliqkRrgLNkpnilylmkpivterdiykiekeendvepy
interface signature	KERLN

Estimated binding specificities ?

contact

# IC=8.491 IC/col=0.849 n_of_columns=10

specificity:

A |   1   6  96   5  24  80   6   6   0   0
C |  85  80   0   5  24   5   5   5   0  96
G |   5   5   0  81  24   5  80  10   0   0
T |   5   5   0   5  24   6   5  75  96   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------------YG--------           +-----------------------------3eyi_B    
                                 +-1 
  ----KATTQTTGLTRTKAFTYT   L   +-2 +-----------------------------2p7c_B    
                               ! ! 
  --TTSGLTYA------------   L --3 +-----------------------------2nra_C    
                               ! 
  RG--------------------       +-----------------------------8ity_V

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updated Sat Jan 10 08:25:06 2026