5ke6_A : 3D-footprint complex

structure name	MOUSE KLF4 ZNF1-3 AND TPG/CPA SEQUENCE DNA COMPLEX STRUCTURE (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=1.99, R-factor=0.200)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ke6_A interface=15,17,18,45,46,47,48,51,73,75,76, thtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDEltRhyrkhtghrpfqcqkcdrafsRsDHlalhmkrhf
interface signature	KSHRSDERRDH

Estimated binding specificities ?

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# IC=11.096 IC/col=1.110 n_of_columns=10

specificity:

A |   0  13   0  96   0  96   0   0   0  13
C |   0  54  96   0  96   0  96  96   0  54
G |  96  16   0   0   0   0   0   0   0  13
T |   0  13   0   0   0   0   0   0  96  16

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updated Thu Sep 12 21:38:38 2024