5ke7_A : 3D-footprint complex

structure name	MOUSE KLF4 ZNF1-3 AND TPG/MPA SEQUENCE DNA COMPLEX STRUCTURE (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.06, R-factor=0.194)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ke7_A interface=17,19,20,47,48,49,50,53,75,77,78, tathtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDEltRhyrkhtghrpfqcqkcdrafsRsDHlalhmkrhf
interface signature	KSHRSDERRDH

Estimated binding specificities ?

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# IC=9.764 IC/col=0.976 n_of_columns=10

specificity:

A |  16  96   0   0   0  24   0   0  16   0
C |  13   0   0   0   0  24   0   0  13  96
G |  54   0  96  96   0  24   0  96  54   0
T |  13   0   0   0  96  24  96   0  13   0

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updated Tue Dec 17 02:06:07 2024