5ke8_A : 3D-footprint complex

structure name	MOUSE KLF4 E446P ZNF1-3 AND MPG/MPG SEQUENCE DNA COMPLEX STRUCTURE (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.45, R-factor=0.233)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ke8_A interface=15,17,18,45,47,51,73,74,75,76, thtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRsDpltRhyrkhtghrpfqcqkcdrafsRSDHlalhmkrhf
interface signature	KSHRDRRSDH

Estimated binding specificities ?

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# IC=7.099 IC/col=0.789 n_of_columns=9

specificity:

A |  96   0   0  24  24   0   0  13  13
C |   0   0   0  24  24   0   0  13  54
G |   0  96  96  24  24   0  96  54  16
T |   0   0   0  24  24  96   0  16  13

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updated Tue Dec 17 02:06:11 2024