5ke9_A : 3D-footprint complex

structure name	MOUSE KLF4 E446P ZNF1-3 AND TPG/CPA SEQUENCE DNA COMPLEX STRUCTURE (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.34, R-factor=0.217)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ke9_A interface=18,20,21,48,49,50,51,54,76,78,79, rtathtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDPltRhyrkhtghrpfqcqkcdrafsRsDHlalhmkrhf
interface signature	KSHRSDPRRDH

Estimated binding specificities ?

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# IC=9.604 IC/col=1.067 n_of_columns=9

specificity:

A |  84   0   0   0   0   0   0  12   0
C |   0   0   0   0   0   0   0  24  60
G |  12  96  96   0  96   0  96  48  12
T |   0   0   0  96   0  96   0  12  24

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updated Thu Sep 12 21:38:51 2024