5kea_A : 3D-footprint complex

structure name	MOUSE KLF4 ZNF1-3 (E446D) AND CPG/CPG SEQUENCE DNA COMPLEX STRUCTURE: FORM I (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.46, R-factor=0.235)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kea_A interface=17,19,20,47,49,50,53,75,76,77,78, tathtcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRsDDltRhyrkhtghrpfqcqkcdrafsRSDHlalhmkrhf
interface signature	KSHRDDRRSDH

Estimated binding specificities ?

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# IC=9.667 IC/col=1.074 n_of_columns=9

specificity:

A |  12  12   0  96   0   0   0   0   0
C |  12  48  96   0  96   0  96  96   0
G |  48  24   0   0   0  96   0   0   0
T |  24  12   0   0   0   0   0   0  96

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updated Thu Sep 12 21:38:55 2024