5keb_A : 3D-footprint complex

structure name	MOUSE KLF4 ZNF1-3 (E446D) AND CPG/CPG SEQUENCE DNA COMPLEX STRUCTURE: FORM II (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.45, R-factor=0.251)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5keb_A interface=14,16,17,44,45,46,47,50,72,73,74,75, htcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDDltRhyrkhtghrpfqcqkcdrafsRSDHlalhmkrhf
interface signature	KSHRSDDRRSDH

Estimated binding specificities ?

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# IC=8.921 IC/col=0.991 n_of_columns=9

specificity:

A |   0   8   0  96   0   8   0   0   8
C |   8  64  88   0  96   8  96  96   8
G |  88   8   0   0   0  72   0   0   8
T |   0  16   8   0   0   8   0   0  72

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updated Thu Sep 12 21:38:59 2024