5keb_A : 3D-footprint complex

structure name	MOUSE KLF4 ZNF1-3 (E446D) AND CPG/CPG SEQUENCE DNA COMPLEX STRUCTURE: FORM II (Krueppel-like factor 4)
reference	Hashimoto et al. 'Nucleic 44 10177 2016
source	Mus musculus
experiment	X-ray (resolution=2.45, R-factor=0.251)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2wbs_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5keb_A interface=14,16,17,44,45,46,47,50,72,73,74,75, htcdyagcgktytKsSHlkahlrthtgekpyhcdwdgcgwkfaRSDDltRhyrkhtghrpfqcqkcdrafsRSDHlalhmkrhf
interface signature	KSHRSDDRRSDH

Estimated binding specificities ?

readout + contact

# IC=8.855 IC/col=0.984 n_of_columns=9

specificity:

A |  66   0   0   7   0   0   7  14   7
C |   7   0   0  82   0   0   1   7  81
G |  14  96  96   0  96   0  88  66   7
T |   9   0   0   7   0  96   0   9   1

scan!

home
updated Sat Aug 2 09:06:10 2025