interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF PNOB8 ASPA-DNA COMPLEX.
referenceStructures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages.
sourceSULFOLOBUS SP. NOB8H2
experimentX-ray (resolution=3.38, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;
reference complex5k5q_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYQTIQ/KYQTIQR/YQTQ/KYQTIQR/YQQ/KYQTQR

Estimated binding specificities ?

readout + contactlogo
# IC=35.056 IC/col=1.209 n_of_columns=29 specificity:   
A |  82   0  96   0   0   0   0   0   0  96   0   0  96   0   0  82  84   0  96   0  96   0  84   0   4  96  96   4   4
C |   6   0   0   0   0  96   0  96   0   0   0   0   0   0   0   4   4  96   0   0   0   0   4   0  82   0   0   6   4
G |   4   0   0   0  96   0   0   0   0   0   0  96   0   0   0   4   4   0   0   0   0  96   4  96   6   0   0   4   4
T |   4  96   0  96   0   0  96   0  96   0  96   0   0  96  96   6   4   0   0  96   0   0   4   0   4   0   0  82  84
scan!

home
updated Tue Sep 10 05:58:52 2024