5kk1_ABCDEF : 3D-footprint complex

structure name	STRUCTURE OF PNOB8 ASPA-DNA COMPLEX.
reference	Structures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages.
source	SULFOLOBUS SP. NOB8H2
experiment	X-ray (resolution=3.38, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5k5q_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kk1_A interface=37,38,39,41,42, stdkyifltprayiivhllkvgkakaseisentqipYQTvIQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5kk1_B interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq > 5kk1_C interface=40,41,42,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQTviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5kk1_D interface=2,40,41,42,44,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTvIQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5kk1_E interface=40,41,45, gkistdkyifltprayiivhllkvgkakaseisentqipYQtviQnirwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevv > 5kk1_F interface=2,40,41,42,45,48, gKistdkyifltprayiivhllkvgkakaseisentqipYQTviQniRwllaegyvvkeqkgeeiyykltdkgkqlataelekirklvevvq
interface signature	YQTIQ/KYQTIQR/YQTQ/KYQTIQR/YQQ/KYQTQR

Estimated binding specificities ?

readout + contact

# IC=34.942 IC/col=1.205 n_of_columns=29

specificity:

A |  82   0  96   0   0   0   0   0   0  96   0   0  96   0   0  82  82   0  96   0  96   0  84   0   6  96  96   4   6
C |   4   0   0   0   0  96   0  96   0   0   0   0   0   0   0   6   4  96   0   0   0   0   4   0  82   0   0   4   4
G |   6   0   0   0  96   0   0   0   0   0   0  96   0   0   0   4   4   0   0   0   0  96   4  96   4   0   0   6   4
T |   4  96   0  96   0   0  96   0  96   0  96   0   0  96  96   4   6   0   0  96   0   0   4   0   4   0   0  82  82

scan!

home
updated Wed Jul 30 09:39:57 2025