5kk5_A : 3D-footprint complex

structure name	ASCPF1(E993A)-CRRNA-DNA TERNARY COMPLEX (CRISPR-associated endonuclease Cpf1)
reference	Rajashankar et al. 'Cell 26 901 2016
source	Acidaminococcus sp. (strain BV3L6) / Acidaminococcus sp. (strain BV3L6)
experiment	X-ray (resolution=3.29, R-factor=0.218)
reference complex	8sfh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kk5_A interface=160,163,541,590,591,594, egftnlyqvsktlrfelipqgktlkhiqeqgfieedkarndhykelkpiidriyktyadqclqlvqldwenlsaaidsyrkekteetrnalieeqatyrnaihdyfigrtdnltdainkrhaeiykglfkaelfngkvlkqlgttehenallrsfdkftTyfSgfyenrknvfsaedistaiphrivqdnfpkfkenchiftrlitavpslrehfenvkkaigifvstsieevfsfpfynqlltqtqidlynqllggisreagtekikglnevlnlaiqkndetahiiaslphrfiplfkqilsdrntlsfileefksdeeviqsfckyktllrnenvletaealfnelnsidlthifishkkletissalcdhwdtlrnalyerriseltgkitksakekvqrslkhedinlqeiisaagkelseafkqktseilshahaaldqplpttlkkqeekeilksqldsllglyhlldwfavdesnevdpefsarltgiklemepslsfynkarnyatkkpysvekfklnfqmptlasgwdvnKeknngailfvknglyylgimpkqlsfeptektsegfdkmyydyfpdaaKMipKcstqlkavtahfqthttpillsnnfiepleitkeiydlnnpekepkkfqtayakktgdqkgyrealckwidftrdflskytkttsidlsslrpssqykdlgeyyaelnpllyhisfqriaekeimdavetgklylfqiynkdfakghhgkpnlhtlywtglfspenlaktsiklngqaelfyrpksiikdrrftsdkfffhvpitlnyqaanspskfnqrvnaylkehpetpiigidrgernliyitvidstgkileqrslntiqqfdyqkkldnrekervaarqawsvvgtikdlkqgylsqviheivdlmihyqavvvlanlekavyqqfekmlidklnclvlkdypaekvggvlnpyqltdqftsfakmgtqsgflfyvpapytskidpltgfvdpfvwktiknhesrkhflegfdflhydvktgdfilhfkmnrnlsfqrglpgfmpaeknetqfdakgtpfiagkriyrdlypanelialleekgivfrdgsnilpkllenddshaidtmvalirsvlqmrnsnaatgedyinspvrdlngvcfdsrfqnpewpmdadangayhialkgqlllnhlkeskdlklqngisnqdwlayiqelrn
interface signature	TSKKMK

Estimated binding specificities ?

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# IC=2.876 IC/col=0.719 n_of_columns=4

specificity:

A |  18   9   2   0
C |  18   9   2  96
G |  18   9   4   0
T |  42  69  88   0

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updated Tue Dec 17 02:11:06 2024