5kl2_A : 3D-footprint complex

structure name	WILMS TUMOR PROTEIN (WT1) ZNF2-4 IN COMPLEX WITH DNA (Wilms tumor protein)
reference	Hashimoto et al. 'Nucleic 44 10165 2016
source	Homo sapiens
experiment	X-ray (resolution=1.69, R-factor=0.166)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kl2_A interface=17,19,20,23,45,46,47,48,51,75,76,77,78,81, ekpyqcdfkdcerrfsRsDQlkRhqrrhtgvkpfqcktcqrkfsRSDHlkThtrthtgekpfscrwpscqkkfaRSDElvRhhnmhqr
interface signature	RDQRRSDHTRSDER

Estimated binding specificities ?

readout + contact

# IC=10.953 IC/col=1.095 n_of_columns=10

specificity:

A |  54   0   0   0   0   1  82   0   0   0
C |  16  96  13  96  96  82   0  96   0  96
G |  13   0   1   0   0   0  14   0  96   0
T |  13   0  82   0   0  13   0   0   0   0

scan!

home
updated Tue Dec 17 02:11:28 2024