5kl4_D : 3D-footprint complex

structure name	WILMS TUMOR PROTEIN (WT1) ZNF2-4 Q369H IN COMPLEX WITH FORMYLATED DNA (Wilms tumor protein)
reference	Hashimoto et al. 'Nucleic 44 10165 2016
source	Homo sapiens
experiment	X-ray (resolution=1.78, R-factor=0.218)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5kl3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kl4_D interface=16,18,19,22,44,46,47,50,74,76,77,80, kpyqcdfkdcerrfsRsDHlkRhqrrhtgvkpfqcktcqrkfsRsDHlkThtrthtgekpfscrwpscqkkfaRsDElvRhhnmhq
interface signature	RDHRRDHTRDER

Estimated binding specificities ?

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# IC=9.298 IC/col=1.033 n_of_columns=9

specificity:

A |   9   0   9   0   0   0   0   0   9
C |  11  96  11   0   0   0   0   0   9
G |  67   0  67   0  96  96  96  96  11
T |   9   0   9  96   0   0   0   0  67

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updated Thu Sep 12 21:43:18 2024