5krb_BG : 3D-footprint complex

structure name	GCNF DNA BINDING DOMAIN - OCT4 DR0 COMPLEX
reference	Ortlund et al. 'J. 428 4981 2016
source	Mus musculus
experiment	X-ray (resolution=2.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5krb_B interface=22,25,30, qrtclicgdratglhygiiscEgcKgffkRsisnkrvyrcsrdkncvmsrkqrnrcqycrllkclqmgmnrkai > 5krb_G interface=20,23,28,78,81, tclicgdratglhygiiscEgcKgffkRsisnkrvyrcsrdkncvmsrkqrnrcqycrllkclqmgmnrkairedgmPggRn
interface signature	EKR/EKRPR

Estimated binding specificities ?

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# IC=10.647 IC/col=0.968 n_of_columns=11

specificity:

A |   0   0   0   0  72  71   0   0  24   0  69
C |   0   0   0  96   8   0   0   0  24  87  11
G |  96  96   0   0   8   8  96  96  24   1   8
T |   0   0  96   0   8  17   0   0  24   8   8

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updated Sat Dec 14 04:15:32 2024