5l6l_ADEH : 3D-footprint complex

structure name	STRUCTURE OF CAULOBACTER CRESCENTUS VAPBC1 BOUND TO OPERATOR DNA
reference	Brodersen et al. 'Nucleic 45 2875 2017
source	CAULOBACTER CRESCENTUS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	AbrB/MazE/MraZ-like;
reference complex	5l6l_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5l6l_A interface=10,12,14,15,19, hharatgktFrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpds > 5l6l_D interface=14,16,18,19,23, hhhhhharatgktFrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpdsveirdedlfperpgl > 5l6l_E interface=10,12,14,15,19, hharatgktFrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpd > 5l6l_H interface=14,16,17,21, hhhharatgktfrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpdsveirdedlfperpg
interface signature	FSNSR/FSNSR/FSNSR/SNSR

Estimated binding specificities ?

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# IC=15.608 IC/col=0.821 n_of_columns=19

specificity:

A |   2   1   0  57  24  96  24  89   0   0   3  96   0  24   0   2  24  89  11
C |  89   0   3  11  24   0  24   3  96   0  91   0   3  24   0  84  24   2  70
G |   3  82   2  13  24   0  24   2   0  96   0   0   2  24   0   4  24   3  11
T |   2  13  91  15  24   0  24   2   0   0   2   0  91  24  96   6  24   2   4

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updated Wed Jul 30 09:40:43 2025