5l6l_ADEH : 3D-footprint complex

structure name	STRUCTURE OF CAULOBACTER CRESCENTUS VAPBC1 BOUND TO OPERATOR DNA
reference	Brodersen et al. 'Nucleic 45 2875 2017
source	CAULOBACTER CRESCENTUS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	AbrB/MazE/MraZ-like;
reference complex	5l6l_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5l6l_A interface=10,12,14,15,19, hharatgktFrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpds > 5l6l_D interface=14,16,18,19,23, hhhhhharatgktFrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpdsveirdedlfperpgl > 5l6l_E interface=10,12,14,15,19, hharatgktFrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpd > 5l6l_H interface=14,16,17,21, hhhharatgktfrSgNSeavRlprdlafgadveltlirsgdvltiypskgsiadlvatlnqmprpdsveirdedlfperpg
interface signature	FSNSR/FSNSR/FSNSR/SNSR

Estimated binding specificities ?

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# IC=15.980 IC/col=0.841 n_of_columns=19

specificity:

A |   4   0  24   8  96  24  88   0   0   0   0   0  24   0  24   8  84   8   4
C |   8   4  24   4   0  24   4   0   0  96   0   4  24   0  24   8   4  88   4
G |  76   4  24  80   0  24   0   0  96   0  96   0  24   0  24   4   4   0  84
T |   8  88  24   4   0  24   4  96   0   0   0  92  24  96  24  76   4   0   4

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updated Tue Sep 10 05:59:47 2024