interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF CAULOBACTER CRESCENTUS VAPBC1 BOUND TO OPERATOR DNA
(VAPB FAMILY PROTEIN)
referenceBrodersen et al. 'Nucleic 45 2875 2017
sourceCAULOBACTER CRESCENTUS
experimentX-ray (resolution=2.70, R-factor=0.181)
structural superfamilyAbrB/MazE/MraZ-like;
sequence familySpoVT / AbrB like domain;
multimeric complexes5l6l_ADEH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureFSNSR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.388 n_of_columns=8 specificity:   
A |   0   0  16  24  24  24  24  54
C |  96   0  13  24  24  24  24  16
G |   0  96  13  24  24  24  24  13
T |   0   0  54  24  24  24  24  13
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updated Fri Sep 13 19:59:36 2024