5lej_AB : 3D-footprint complex

structure name	THE TRANSCRIPTIONAL REGULATOR PRFA FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF
reference	Sauer-Eriksson et al. 'Proc. 113 14733 2016
source	Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	5lej_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5lej_A interface=181,183,184,186,187, naqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln > 5lej_B interface=182,184,185,187,188, mnaqaeefkkyletngikpkqfhkkelifnqwdpqeyciflydgitkltsisengtimnlqyykgafvimsgfidtetsvgyynleviseqatayvikinelkellsknlthffyvfqtlqkqvsyslakfndfsingklgsicgqlliltyvygketpdgikitldnltmqelgyssgiaHsSAvSRiisklkqekvivyknscfyvqnldylkryapkldewfylacpatwgkln
interface signature	HSASR/HSASR

Estimated binding specificities ?

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# IC=9.064 IC/col=0.824 n_of_columns=11

specificity:

A |   8  88  72   0  96  24  24   8   0   0   0
C |   8   0   8  96   0  24  24   8   0   0   8
G |   8   8   8   0   0  24  24   8  96   0   0
T |  72   0   8   0   0  24  24  72   0  96  88

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updated Tue Sep 10 06:02:06 2024