structure name | THE TRANSCRIPTIONAL REGULATOR PRFA FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF (Listeriolysin regulatory protein) |
reference | Sauer-Eriksson et al. 'Proc. 113 14733 2016 |
source | Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) / Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) |
experiment | X-ray (resolution=2.70, R-factor=0.231) |
structural superfamily | cAMP-binding domain-like;"Winged helix" DNA-binding domain; |
multimeric complexes | 5lej_AB 5lek_AB 5lrs_AB 5x6d_GH 5x6d_MN 5x6e_EF 5x6e_MN 6qwf_AB 6qwh_AB 6qwk_AB 6qwm_AB |
redundant complexes | 5lek_B 5lrs_A 5x6d_N 5x6e_N 6qwf_B 6qwh_A 6qwk_A 6qwm_B |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | HSASR |
Estimated binding specificities ?
contact |
A | 9 67 96 9 96 C | 11 9 0 67 0 G | 9 11 0 9 0 T | 67 9 0 11 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: PRFA | ||
TTAACATTTGTTAA | PubMed | 5lej_A(2.08e-05), 5lej_AB(1.89e-10), 5lek_AB(2.35e-08), ... (total=11) |
TTAACANNTGTTAA | PubMed | 5lej_A(2.08e-05), 5lej_AB(1.89e-10), 5lek_AB(2.35e-08), ... (total=11) |
TTAACAGCGTTTGTTAA | PubMed | 5lej_A(3.60e-05), 5lej_AB(3.76e-03), 5x6d_MN(1.42e-03), ... (total=8) |
Dendrogram of similar interfaces ?
matrix format----HT--STATSTRG---- L +---5lej_A +-3 ----STRGECTANGKG---- L +--------------4 +---3mzh_A ! ! ----TTLTECTASTRG---- L +----5 +----4i2o_B ! ! --RGSTRGMCTTRT------ L ! ! +-4u0y_B ! +-----------------2 ETNTSCRGHC--RT------ L --7 +-4h0e_A ! --------------RCYG-- ! +2acj_B ! +--------------------1 ----STKTPTTTFT----RA L +--6 +4aso_F ! ----TT--PTTCSTNT--RT L +---------------------4lln_I |
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updated Fri Sep 13 19:59:55 2024