structure name | STRUCTURE OF THE DNA-BINDING DOMAIN OF LUX ARRHYTHMO (Transcription factor LUX) |
reference | Zubieta et al. 'To ? ? ? |
source | Arabidopsis thaliana |
experiment | X-ray (resolution=2.14, R-factor=0.197) |
structural superfamily | Homeodomain-like; |
sequence family | Myblike DNAbinding domain; |
reference complex | 6qec_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RRESQK |
Estimated binding specificities ?
contact |
A | 5 17 4 96 4 0 6 C | 61 6 4 0 4 96 17 G | 17 69 4 0 4 0 4 T | 13 4 84 0 84 0 69scan! |
Dendrogram of similar interfaces ?
matrix formatRT--------------RCET----SA--QAKT------ L +6qec_A +--------------1 ----------------YTVC--KGDC--KC-------- L +-----7 +2qhb_A ! ! ----------KT----TAST--TTCT------------ L +----10 +--------------2oeh_A ! ! --------DT------RGRCTT--KT------------ L ! +--------------------2o9l_A ! RT----------------------NT----NA--IARG L ! +----------------1b72_B ! ! RA--------------------RCVT--CTNA--QTRC L ! +--8 +-----------1au7_A ! ! ! ! RT----------------------VA--QTNA------ L +-14 ! +----6 +1fjl_B ! ! ! ! +-2 RT----------------------IT--QCNA--ACRG L ! ! +-9 +-----------3 +6a8r_A ! ! ! ! ! RT------------------NT----NA--ITRG---- L ! ! ! ! +5zjt_B ! ! +-12 ! ----------------------RCVA--CTNA--QA-- L ! ! ! ! +-------------------7xrc_C ! ! ! ! RT----------------------IA--KGNA------ L ! ! ! +---------------------6m3d_C +-15 +-13 RT----------------------VA--QTNA------ L ! ! ! +-5hod_A ! ! ! +------4 RA----------------------YA--QTNA--AARG L ! ! ! +-----------5 +-6wig_A ! ! ! ! ! ----------------------RTVA--ITNA--MCRG L +-16 ! +-11 +--------1yrn_A ! ! ! ! --NGRGTG----LG----LC------------------ ! ! ! +--------------------6vjw_A ! ! ! ----------YA--KTPTPG--YTRG------------ L -17 ! +---------------------------4mtd_D ! ! --------RC---------------------------- ! +-----------------------------7cow_T ! --------------STRGQTQAST-------------- L +-----------------------------7t8k_B |
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updated Thu Sep 12 21:46:04 2024