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legend  pdf

structure nameDNA BINDING DOMAIN OF LUX ARRYTHMO IN COMPLEX WITH DNA
(Transcription factor LUX)
referenceZubieta et al. Proc.Natl.Acad.Sci.USA 117 6901 2020
sourceArabidopsis thaliana
experimentX-ray (resolution=1.90, R-factor=0.194)
structural superfamilyHomeodomain-like;
sequence familyMyblike DNAbinding domain;
redundant complexes5lxu_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRESQK

Estimated binding specificities ?

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# IC=4.475 IC/col=0.895 n_of_columns=5 specificity:   
A |  96  96  13  96  13
C |   0   0  16   0  13
G |   0   0  13   0  13
T |   0   0  54   0  57
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ------DCNA--KANAHTNTSCTC----   L       +-----------------------------1msf_C    
                                       +-3 
  ------YTVC--KGDC--KC--------   L   +-4 +-----------------------------2qhb_A    
                                     ! ! 
  ----KTTAST--TTCT------------   L   ! +-----------------------------2oeh_A    
                                   --5 
  RT----------FTYA--QTNA--ATRG   L   !                            +6ryd_F    
                                     !            +---------------1 
  RA------------YA--QTNA--AARG   L   +------------2               +6wig_A    
                                                  ! 
  --DT--RGRCTT--KT------------   L                +----------------2o9l_A    
                                   

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updated Fri Sep 13 23:08:52 2024