structure name | DNA BINDING DOMAIN OF LUX ARRYTHMO IN COMPLEX WITH DNA (Transcription factor LUX) |
reference | Zubieta et al. Proc.Natl.Acad.Sci.USA 117 6901 2020 |
source | Arabidopsis thaliana |
experiment | X-ray (resolution=1.90, R-factor=0.194) |
structural superfamily | Homeodomain-like; |
sequence family | Myblike DNAbinding domain; |
redundant complexes | 5lxu_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RRESQK |
Estimated binding specificities ?
readout + contact |
A | 96 96 13 96 13 C | 0 0 16 0 13 G | 0 0 13 0 13 T | 0 0 54 0 57scan! |
Dendrogram of similar interfaces ?
matrix format------DCNA--KANAHTNTSCTC---- L +-----------------------------1msf_C +-3 ------YTVC--KGDC--KC-------- L +-4 +-----------------------------2qhb_A ! ! ----KTTAST--TTCT------------ L ! +-----------------------------2oeh_A --5 RT----------FTYA--QTNA--ATRG L ! +6ryd_F ! +---------------1 RA------------YA--QTNA--AARG L +------------2 +6wig_A ! --DT--RGRCTT--KT------------ L +----------------2o9l_A |
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updated Fri Sep 13 23:08:52 2024