5m0r_AI : 3D-footprint complex

structure name	CRYO-EM RECONSTRUCTION OF THE MAEDI-VISNA VIRUS (MVV) STRAND TRANSFER COMPLEX
source	MAEDI VISNA VIRUS (STRAIN KV1772) / MAEDI VISNA VIRUS (STRAIN KV1772) / MAEDI VISNA VIRUS (STRAIN KV1772) / MAEDI VISNA VIRUS (STRAIN KV1772)
experiment	NMR
structural superfamily	Ribonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
reference complex	7u32_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5m0r_A interface=69,94,121, wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdytHyedkiilvwvetnsgliyaervkgEtgqefrvqtmkwyamfapkslqsdngPafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 5m0r_I interface=69,94,121, wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdytHyedkiilvwvetnsgliyaervkgEtgqefrvqtmkwyamfapkslqsdngPafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk
interface signature	HEP/HEP

Estimated binding specificities ?

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# IC=6.130 IC/col=0.472 n_of_columns=13

specificity:

A |   0   0  16   0  24  24  24  24  24  13  24  75   9
C |   0   0  13   0  24  24  24  24  24  68  24   6  75
G |  96  96   6  96  24  24  24  24  24   0  24   9   6
T |   0   0  61   0  24  24  24  24  24  15  24   6   6

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updated Sat Dec 16 03:15:01 2023