5m0r_AI : 3D-footprint complex

structure name	CRYO-EM RECONSTRUCTION OF THE MAEDI-VISNA VIRUS (MVV) STRAND TRANSFER COMPLEX
source	MAEDI VISNA VIRUS (STRAIN KV1772) / MAEDI VISNA VIRUS (STRAIN KV1772) / MAEDI VISNA VIRUS (STRAIN KV1772) / MAEDI VISNA VIRUS (STRAIN KV1772)
experiment	NMR
structural superfamily	Ribonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
reference complex	7u32_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5m0r_A interface=69,94,121, wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdytHyedkiilvwvetnsgliyaervkgEtgqefrvqtmkwyamfapkslqsdngPafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 5m0r_I interface=69,94,121, wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdytHyedkiilvwvetnsgliyaervkgEtgqefrvqtmkwyamfapkslqsdngPafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk
interface signature	HEP/HEP

Estimated binding specificities ?

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# IC=7.059 IC/col=0.543 n_of_columns=13

specificity:

A |   6   0  12  12  24  24  24  24  24   0  60   0   0
C |   0   6  12  12  24  24  24  24  24  96  12  96  96
G |  90   0  54  60  24  24  24  24  24   0  12   0   0
T |   0  90  18  12  24  24  24  24  24   0  12   0   0

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updated Tue Sep 10 06:04:26 2024