structure name | MVV CLEAVED SYNAPTIC COMPLEX (CSC) INTASOME AT 3.4 A RESOLUTION (INTEGRASE) |
source | VISNA/MAEDI VIRUS EV1 KV1772 |
experiment | NMR |
structural superfamily | Ribonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase; |
sequence family | Integrase core domain; Integrase DNA binding domain; Integrase Zinc binding domain; |
multimeric complexes | 5m0r_AI 5m0r_DN 5m0r_FL 7u32_AFL 7u32_DIN 7z1z_DEIN 7z1z_FL 7zpp_ADIN 7zpp_FL |
redundant complexes | 5m0r_N 7z1z_M 7zpp_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | QAERQ |
Estimated binding specificities ?
contact |
A | 0 3 4 48 C | 0 85 2 16 G | 96 5 88 16 T | 0 3 2 16scan! |
Dendrogram of similar interfaces ?
matrix formatHG--DT----------------QGECSGHCQT---------- +-----------------------------6rwm_A +-2 ------KT--------HTETPAQAEARC-------------- L ! ! +----------------3oym_A +-3 +------------1 HGQTDT--TAHA----------QGECSCKG------------ ! ! +----------------6vdk_A --4 ! --------------------------------RAYACAPAWA ! +-----------------------------3jca_H ! ------------KTYC-------------------------- L +-----------------------------6x68_D |
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updated Sat Sep 14 04:48:24 2024