interface graph thumbnail
legend  pdf

structure nameMVV CLEAVED SYNAPTIC COMPLEX (CSC) INTASOME AT 3.4 A RESOLUTION
(INTEGRASE)
sourceVISNA/MAEDI VIRUS EV1 KV1772
experimentNMR
structural superfamilyRibonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
sequence familyIntegrase core domain; Integrase DNA binding domain; Integrase Zinc binding domain;
multimeric complexes5m0r_AI 5m0r_DN 5m0r_FL 7u32_AFL 7u32_DIN 7z1z_DEIN 7z1z_FL 7zpp_ADIN 7zpp_FL
redundant complexes5m0r_N 7z1z_M 7zpp_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureQAERQ

Estimated binding specificities ?

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# IC=3.350 IC/col=0.837 n_of_columns=4 specificity:   
A |   0   3   4  48
C |   0  85   2  16
G |  96   5  88  16
T |   0   3   2  16
scan!

Dendrogram of similar interfaces ?

matrix format
  
  HG--DT----------------QGECSGHCQT----------           +-----------------------------6rwm_A    
                                                     +-2 
  ------KT--------HTETPAQAEARC--------------   L     ! !            +----------------3oym_A    
                                                   +-3 +------------1 
  HGQTDT--TAHA----------QGECSCKG------------       ! !              +----------------6vdk_A    
                                                 --4 ! 
  --------------------------------RAYACAPAWA       ! +-----------------------------3jca_H    
                                                   ! 
  ------------KTYC--------------------------   L   +-----------------------------6x68_D    
                                                 

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updated Sat Sep 14 04:48:24 2024