5mhk_CDJ : 3D-footprint complex

structure name	ICP4 DNA-BINDING DOMAIN IN COMPLEX WITH 19MER DNA DUPLEX FROM ITS OWN PROMOTER
reference	Lockhart-Cairns et al. 'Nucleic 45 8064 2017
source	HUMAN HERPESVIRUS 1
experiment	X-ray (resolution=2.28, R-factor=?)
reference complex	5mhj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5mhk_C interface=102,104,126,127,165,166, eldadatsgafyaryrdgyvsgepwpgagppppgrvlygglgdsrpglwgapeaeearrrfeasgapaavwapelgdaaqqyalitrllytpdaeamgwlqNpRvvpgdvaldqacfrisgaarnSSsfitgsvaravphlgyamaagrfgwglahaaaavamsRRydraqkgflltslrrayapllarenaalt > 5mhk_D interface=129,130,131,168, rrveldadatsgafyaryrdgyvsgepwpgagppppgrvlygglgdsrpglwgapeaeearrrfeasgapaavwapelgdaaqqyalitrllytpdaeamgwlqnprvvpgdvaldqacfrisgaarnSSSfitgsvaravphlgyamaagrfgwglahaaaavamsRrydraqkgflltslrrayapllarenaal > 5mhk_J interface=1, Ft
interface signature	NRSSRR/SSSR/F

Estimated binding specificities ?

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# IC=6.956 IC/col=0.580 n_of_columns=12

specificity:

A |   0   0  24  24  24  24  24  54   0  13  82   0
C |  96   0  24  24  24  24  24  13  96   0   0  13
G |   0  96  24  24  24  24  24  13   0  82  14   1
T |   0   0  24  24  24  24  24  16   0   1   0  82

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updated Thu Jun 25 06:30:44 2026