5mhk_CDJ : 3D-footprint complex

structure name	ICP4 DNA-BINDING DOMAIN IN COMPLEX WITH 19MER DNA DUPLEX FROM ITS OWN PROMOTER
reference	Lockhart-Cairns et al. 'Nucleic 45 8064 2017
source	HUMAN HERPESVIRUS 1
experiment	X-ray (resolution=2.28, R-factor=?)
reference complex	5mhj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5mhk_C interface=102,104,126,127,165,166, eldadatsgafyaryrdgyvsgepwpgagppppgrvlygglgdsrpglwgapeaeearrrfeasgapaavwapelgdaaqqyalitrllytpdaeamgwlqNpRvvpgdvaldqacfrisgaarnSSsfitgsvaravphlgyamaagrfgwglahaaaavamsRRydraqkgflltslrrayapllarenaalt > 5mhk_D interface=129,130,131,168, rrveldadatsgafyaryrdgyvsgepwpgagppppgrvlygglgdsrpglwgapeaeearrrfeasgapaavwapelgdaaqqyalitrllytpdaeamgwlqnprvvpgdvaldqacfrisgaarnSSSfitgsvaravphlgyamaagrfgwglahaaaavamsRrydraqkgflltslrrayapllarenaal > 5mhk_J interface=1, Ft
interface signature	NRSSRR/SSSR/F

Estimated binding specificities ?

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# IC=8.431 IC/col=0.703 n_of_columns=12

specificity:

A |  96   0   0   0  13  13  24  24  24  24   0   0
C |   0   0  96   0  16  54  24  24  24  24  96   0
G |   0   0   0  96  13  16  24  24  24  24   0  96
T |   0  96   0   0  54  13  24  24  24  24   0   0

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updated Tue Sep 10 06:13:45 2024