5n8u_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DROSOPHILA DHX36 HELICASE IN COMPLEX WITH CTCTCCT (CG9323, isoform A)
reference	Chen et al. 'To ? ? ?
source	Drosophila melanogaster
experiment	X-ray (resolution=2.62, R-factor=0.186)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase associated domain HA2; Domain of unknown function DUF1605; Helicase conserved Cterminal domain;
reference complex	5n8r_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5n8u_B interface=178,200,358,391,439,450,494,561,590,591,597,602,606,713,729,730,731,751, irlgcnvsapsgvlervkelmedysrapdakfqqqfrhllsvnfeefvaetkernadldwvnpklderlqlelgqrqleenakkrlearkklptmkyaddiiqavrenqvilivgstgcgkttqvpqillddaisrgcasscriictqprrisaiaiaewvsyerceslgnsvgyqiRlesrkarerasitycttgvllQqlqsdplmhnlsvlildeihersvetdllmgllkvilphrpdlkvilmsatvreqdfcdyfnncpmfriegvmfpvkmlyledvlsktnyefqkrmkheamiepylrrirnsydsrvldklrlpesegcedidfiadlvyyicenepegailvflpgYdkisqlynildkpktskgqrwrdhmavfplhsLmqsgeqqavfrrppagqrkviistiiaetsvtiddvvyvinsgrtkaTnydietniqsLdevwvtkantqqrrgragrvrpgicynlfsraredrmddiptpEilrsklesiilslkllhiddpyrflqtlinapnpeaikmgvellkriealdqtgtltplgmhlaklPidpqmgkmilmsalfccldpitsaaaalSFkspfySplgkEsrvDeikrrmarnmrsdhlmvhntiiayrdsryshaerdfcyknflssmtlqqlermknqfsellynykflassnckdaasnknsekipllraiigaglypnmahlrksrRaihtmatddgrrvnfHPSsvnsgesgfdsayfvyfqrQkstdlflldstmvfpmaliifgdgveagvtqntpylcvaktyyfkcnretadvviqlrsnleklllkkalypapieengyekqlikaielllslderl
interface signature	RQYLTLEPSFSEDRHPSQ

Estimated binding specificities ?

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# IC=6.983 IC/col=0.873 n_of_columns=8

specificity:

A |   0   0   0   0  24  21  12   0
C |  96   0  96   0  24  31  60   0
G |   0   0   0   0  24  21  12   0
T |   0  96   0  96  24  23  12  96

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updated Mon Dec 18 13:21:26 2023