5n9e_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DROSOPHILA DHX36 HELICASE IN COMPLEX WITH TGGGGATTT (CG9323, isoform A)
reference	Hai-Lei Guo et al. 'To ? ? ?
source	Drosophila melanogaster
experiment	X-ray (resolution=3.01, R-factor=0.185)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase associated domain HA2; Domain of unknown function DUF1605; Helicase conserved Cterminal domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5n9e_B interface=176,198,199,201,202,359,392,440,451,495,498,560,562,564,591,592,598,603,607,671,715,732,733,737, lgcnvsapsgvlervkelmedysrapdakfqqqfrhllsvnfeefvaetkernadldwvnpklderlqlelgqrqleenakkrlearkklptmkyaddiiqavrenqvilivgstgcgkttqvpqillddaisrgcasscriictqprrisaiaiaewvsyerceslgnsvgyqiRlesrkarerasitycttgvllQQlQSdplmhnlsvlildeihersvetdllmgllkvilphrpdlkvilmsatvreqdfcdyfnncpmfriegvmfpvkmlyledvlsktnyefqpperrmkheamiepylrrirnsydsrvldklrlpesegcedidfiadlvyyicenepegailvflpgYdkisqlynildkpktskgqrwrdhmavfplhsLmqsgeqqavfrrppagqrkviistiiaetsvtiddvvyvinsgrtkaTnydietniqsLdevwvtkantqqrrgragrvrpgicynlfsraredrmddiptpEilRsklesiilslkllhiddpyrflqtlinapnpeaikmgvellkriealdqtgtltplgmhlaKlPiDpqmgkmilmsalfccldpitsaaaalSFkspfySplgkEsrvDeikrrmarnmrsdhlmvhntiiayrdsryshaerdfcyknflssmtlqqlermknqfsellynYkflassnckdaasnknsekipllraiigaglypnmahlrksrqRaihtmatddgrrvnfhPSsvnSgesgfdsayfvyfqrqkstdlflldstmvfpmaliifgdgveagvtqntpylcvaktyyfkcnretadvviqlrsnleklllkkalypapieengyekqlikaielllslderl
interface signature	RQQQSYLTLERKPDSFSEDYRPSS

Estimated binding specificities ?

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# IC=9.764 IC/col=1.085 n_of_columns=9

specificity:

A |   0   0   0   0   0  54  13   0   0
C |   0   0   0   0   0  16  13   0   0
G |   0  96  96  96  96  13  16   0   0
T |  96   0   0   0   0  13  54  96  96

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updated Tue Dec 17 02:21:15 2024