5n9f_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DROSOPHILA DHX36 HELICASE IN COMPLEX WITH SSDNA CPG_A (CG9323, isoform A)
reference	Hai-Lei Guo et al. 'To ? ? ?
source	Drosophila melanogaster
experiment	X-ray (resolution=2.97, R-factor=0.217)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase associated domain HA2; Domain of unknown function DUF1605; Helicase conserved Cterminal domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5n9f_B interface=178,200,201,203,204,225,358,359,391,439,450,494,497,502,561,563,597,602,606,610,719,736,737,741, irlgcnvsapsgvlervkelmedysrapdakfqqqfrhllsvnfeefvaetkernadldwvnpklderlqlelgqrqleenakkrlearkklptmkyaddiiqavrenqvilivgstgcgkttqvpqillddaisrgcasscriictqprrisaiaiaewvsyerceslgnsvgyqiRlesrkarerasitycttgvllQQlQSdplmhnlsvlildeihersvEtdllmgllkvilphrpdlkvilmsatvreqdfcdyfnncpmfriegvmfpvkmlyledvlsktnyefqkrmkheamiepylrrirnsydsrvldklrlpesegcedidfiadlvyyicenepegailvflpgYDkisqlynildkpktskgqrwrdhmavfplhsLmqsgeqqavfrrppagqrkviistiiaetsvtiddvvyvinsgrtkaTnydietniqsLdevwvtkantqqrrgragrvrpgicynlfsraredrmddiptpEilRskleSiilslkllhiddpyrflqtlinapnpeaikmgvellkriealdqtgtltplgmhlaklPiDpqmgkmilmsalfccldpitsaaaalsfkspfySplgkEsrvDeikRrmarnmrsdhlmvhntiiayrdsryshaerdfcyknflssmtlqqlermknqfsellynykflassnckdaasnknsekipllraiigaglypnmahlrksrqiknrvRaihtmatddgrrvnfhPSsvnSgesgfdsayfvyfqrqkstdlflldstmvfpmaliifgdgveagvtqntpylcvaktyyfkcnretadvviqlrsnleklllkkalypapieengyekqlikaielllslderl
interface signature	RQQQSEYDLTLERSPDSEDRRPSS

Estimated binding specificities ?

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# IC=8.373 IC/col=0.930 n_of_columns=9

specificity:

A |   0   0   0   0  38  12  21  96   0
C |   0   0   0   0  19  60  21   0   0
G |  96  96  96  96  19  12  33   0   0
T |   0   0   0   0  20  12  21   0  96

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updated Tue Dec 17 02:21:27 2024