5n9f_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DROSOPHILA DHX36 HELICASE IN COMPLEX WITH SSDNA CPG_A (CG9323, isoform A)
reference	Hai-Lei Guo et al. 'To ? ? ?
source	Drosophila melanogaster
experiment	X-ray (resolution=2.97, R-factor=0.217)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase associated domain HA2; Domain of unknown function DUF1605; Helicase conserved Cterminal domain;
reference complex	5n8r_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5n9f_B interface=178,200,201,203,204,225,358,359,391,439,450,494,497,502,561,563,597,602,606,610,719,736,737,741, irlgcnvsapsgvlervkelmedysrapdakfqqqfrhllsvnfeefvaetkernadldwvnpklderlqlelgqrqleenakkrlearkklptmkyaddiiqavrenqvilivgstgcgkttqvpqillddaisrgcasscriictqprrisaiaiaewvsyerceslgnsvgyqiRlesrkarerasitycttgvllQQlQSdplmhnlsvlildeihersvEtdllmgllkvilphrpdlkvilmsatvreqdfcdyfnncpmfriegvmfpvkmlyledvlsktnyefqkrmkheamiepylrrirnsydsrvldklrlpesegcedidfiadlvyyicenepegailvflpgYDkisqlynildkpktskgqrwrdhmavfplhsLmqsgeqqavfrrppagqrkviistiiaetsvtiddvvyvinsgrtkaTnydietniqsLdevwvtkantqqrrgragrvrpgicynlfsraredrmddiptpEilRskleSiilslkllhiddpyrflqtlinapnpeaikmgvellkriealdqtgtltplgmhlaklPiDpqmgkmilmsalfccldpitsaaaalsfkspfySplgkEsrvDeikRrmarnmrsdhlmvhntiiayrdsryshaerdfcyknflssmtlqqlermknqfsellynykflassnckdaasnknsekipllraiigaglypnmahlrksrqiknrvRaihtmatddgrrvnfhPSsvnSgesgfdsayfvyfqrqkstdlflldstmvfpmaliifgdgveagvtqntpylcvaktyyfkcnretadvviqlrsnleklllkkalypapieengyekqlikaielllslderl
interface signature	RQQQSEYDLTLERSPDSEDRRPSS

Estimated binding specificities ?

contact

# IC=9.474 IC/col=1.053 n_of_columns=9

specificity:

A |   0   0   0   0  33   0  10  96   0
C |   0   0   0   0  21  96  21   0   0
G |  96  96  96  96  21   0  44   0   0
T |   0   0   0   0  21   0  21   0  96

scan!

home
updated Mon Dec 18 13:22:44 2023