5trd_AB : 3D-footprint complex

structure name	STRUCTURE OF RBKR (RIBOFLAVIN KINASE) FROM THERMOPLASMA ACIDOPHILUM DETERMINED IN COMPLEX WITH CTP AND ITS COGNATE DNA OPERATOR
reference	Rodionova et al. 'To ? ? ?
source	Thermoplasma acidophilum
experiment	X-ray (resolution=1.85, R-factor=?)
structural superfamily	Riboflavin kinase-like;"Winged helix" DNA-binding domain;
reference complex	5trd_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5trd_A interface=34,35,36,37,39,40, dqyyraikkikeaaeasnrayltsskladmlgiSQQSaSRiiidlekngyitrtvtkrgqilnitekgldvlytefadlsrilaiknnvvitgtvtsgmgegryyvarkqyiiqfqeklgiipylgtlnikvdqaslpelrkirgfrgihiegfktedrtfgsvkafpakiqnipcfvimpertvytdvieiisdkylreeinlhdgdrvsvevytegh > 5trd_B interface=22,32,33,34,35,37,38,55, yyraikkikeaaeasnrayltSskladmlgiSQQSaSRiiidlekngyitrtvtKrgqilnitekgldvlytefadlsrilaiknnvvitgtvtsgmgegryyvarkqyiiqfqeklgiipylgtlnikvdqaslpelrkirgfrgihiegfktedrtfgsvkafpakiqnipcfvimpertvytdvieiisdkylreeinlhdgdrvsvevyte
interface signature	SQQSSR/SSQQSSRK

Estimated binding specificities ?

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# IC=8.643 IC/col=0.576 n_of_columns=15

specificity:

A |  96   0   6   6  24  24  24  24  24  24   6  89   0   0  64
C |   0  96   6  70  24  24  24  24  24  24   6   0   0   0  12
G |   0   0   8   6  24  24  24  24  24  24   6   7  96   0   6
T |   0   0  76  14  24  24  24  24  24  24  78   0   0  96  14

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updated Tue Sep 10 08:36:13 2024