5trd_AB : 3D-footprint complex

structure name	STRUCTURE OF RBKR (RIBOFLAVIN KINASE) FROM THERMOPLASMA ACIDOPHILUM DETERMINED IN COMPLEX WITH CTP AND ITS COGNATE DNA OPERATOR
reference	Rodionova et al. 'To ? ? ?
source	Thermoplasma acidophilum
experiment	X-ray (resolution=1.85, R-factor=?)
structural superfamily	Riboflavin kinase-like;"Winged helix" DNA-binding domain;
reference complex	5trd_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5trd_A interface=34,35,36,37,39,40, dqyyraikkikeaaeasnrayltsskladmlgiSQQSaSRiiidlekngyitrtvtkrgqilnitekgldvlytefadlsrilaiknnvvitgtvtsgmgegryyvarkqyiiqfqeklgiipylgtlnikvdqaslpelrkirgfrgihiegfktedrtfgsvkafpakiqnipcfvimpertvytdvieiisdkylreeinlhdgdrvsvevytegh > 5trd_B interface=22,32,33,34,35,37,38,55, yyraikkikeaaeasnrayltSskladmlgiSQQSaSRiiidlekngyitrtvtKrgqilnitekgldvlytefadlsrilaiknnvvitgtvtsgmgegryyvarkqyiiqfqeklgiipylgtlnikvdqaslpelrkirgfrgihiegfktedrtfgsvkafpakiqnipcfvimpertvytdvieiisdkylreeinlhdgdrvsvevyte
interface signature	SQQSSR/SSQQSSRK

Estimated binding specificities ?

readout + contact

# IC=8.866 IC/col=0.591 n_of_columns=15

specificity:

A |   0  96   0   0  68  24  24  24  24  24  24   6  75   0   0
C |  13   0  96   7  16  24  24  24  24  24  24   6   9   0   0
G |   6   0   0   0   6  24  24  24  24  24  24  75   6  96   0
T |  77   0   0  89   6  24  24  24  24  24  24   9   6   0  96

scan!

home
updated Wed Jul 30 12:30:32 2025