| structure name | STRUCTURE OF RBKR (RIBOFLAVIN KINASE) FROM THERMOPLASMA ACIDOPHILUM DETERMINED IN COMPLEX WITH CTP AND ITS COGNATE DNA OPERATOR (Riboflavin kinase) |
| reference | Rodionova et al. 'To ? ? ? |
| source | Thermoplasma acidophilum |
| experiment | X-ray (resolution=1.85, R-factor=0.176) |
| structural superfamily | Riboflavin kinase-like;"Winged helix" DNA-binding domain; |
| sequence family | Domain of unknown function DUF120; |
| multimeric complexes | 5trd_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SSQQSSRK |
Estimated binding specificities ?
| contact |  |
A | 9 96 0 0 67 67 C | 9 0 0 0 9 9 G | 9 0 96 0 9 11 T | 69 0 0 96 11 9scan! |
Dendrogram of similar interfaces ?
matrix formatST--STQAQGST--SART----------KT-- L +-------------------5trd_B +-7 ----NTHG--RT--YTPT------------RT L ! +-------------------6qil_A +-8 ------------------YGRG---------- ! ! +-4wcg_A ! ! +-------------4 RA--ST--ECTT--RAKA-------------- ! +----6 +-7oz3_B ! ! ETNTSCRGHC----RT----------QA---- ! +---------------5d4s_B +---9 --NGLTKTPTST--TT----RT--------RT L ! ! +7el3_B ! ! +-1 --ET--RGTCTG--STRG------------KT L ! ! +------------3 +6q2b_B ! ! ! ! ----TT--PTTC--STNT------------RT L +-10 +---------5 +4lln_I ! ! ! ----STQTPT--TTRG------------HT-- L ! ! +------------5xxp_A ! ! ----------------RCYG--KT-------- -11 ! +2acj_B ! +--------------------------2 --------TTHT----KG------RC------ L ! +7b0c_A ! --------KGTA----TA--RG---------- L +----------------------------1xsd_A |
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updated Fri Sep 13 20:29:26 2024