5u01_ABCD : 3D-footprint complex

structure name	COOPERATIVE DNA BINDING BY TWO RELA DIMERS
reference	Ghosh et al. 'J. 292 18821 2017
source	MUS MUSCULUS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5u01_A interface=15,17,18,20,21,23,169, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_B interface=15,17,18,20,21,23,24,169, pyveiieqpkqrgmRfRYkCEgRSagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_C interface=15,17,18,21,23,169, pyveiieqpkqrgmRfRYkcEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_D interface=15,17,18,20,21,24,169, pyveiieqpkqrgmRfRYkCEgrSagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYCERSR/RRYERR/RRYCESR

Estimated binding specificities ?

readout + contact

# IC=23.066 IC/col=1.048 n_of_columns=22

specificity:

A |   5   0   0   0  96  81  24   5   0   0   0   0   0   0   0  76  80  24   5   0   0   0
C |   5  96   0   0   0   5  24   6   0  96  96  96   0   0   0   5   6  24   5   0  96  96
G |  81   0  96  96   0   5  24   5   0   0   0   0  96  96  96   5   5  24   5   0   0   0
T |   5   0   0   0   0   5  24  80  96   0   0   0   0   0   0  10   5  24  81  96   0   0

scan!

home
updated Sat Dec 14 07:12:03 2024