5u01_ABCD : 3D-footprint complex

structure name	COOPERATIVE DNA BINDING BY TWO RELA DIMERS
reference	Ghosh et al. 'J. 292 18821 2017
source	MUS MUSCULUS
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	9bdw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5u01_A interface=15,17,18,20,21,23,169, pyveiieqpkqrgmRfRYkCEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_B interface=15,17,18,20,21,23,24,169, pyveiieqpkqrgmRfRYkCEgRSagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_C interface=15,17,18,21,23,169, pyveiieqpkqrgmRfRYkcEgRsagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd > 5u01_D interface=15,17,18,20,21,24,169, pyveiieqpkqrgmRfRYkCEgrSagsipgerstdttkthptikingytgpgtvrislvtkdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnnnpfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnRapntaelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd
interface signature	RRYCERR/RRYCERSR/RRYERR/RRYCESR

Estimated binding specificities ?

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# IC=24.049 IC/col=1.046 n_of_columns=23

specificity:

A |   7   0   0  96  77  24   3   6   0   0   0   0   0   0  96  84  24   6   0   0   0   0   3
C |  73   0   0   0   9  24   7   3  96  96  96   0   0   0   0   3  24   3   0  96  96   0  84
G |   7  96  96   0   3  24   7   3   0   0   0  96  96  96   0   3  24   3   0   0   0  96   3
T |   9   0   0   0   7  24  79  84   0   0   0   0   0   0   0   6  24  84  96   0   0   0   6

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updated Tue Sep 10 08:43:10 2024