5u91_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TRE/LOXLTR COMPLEX
reference	Karpinski et al. 'Nucleic 45 9726 2017
source	synthetic construct
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	5u91_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5u91_A interface=29,30,33,36,75,76,79,83,230,232,233,234,246,248,251,271, palpadatsdevrknlmdvfrdrpafseHTweMllSvcrswaawcklnnrkwfpaepedvrdyllhlqarglavKTiqQhlcRlnmlhrrsglprpsdsnavslvmrrirkenvdagertkqalafertdfdqvrslmensdrcqdirnlaflgvayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRRYgvaapsatsqlStYalQrifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwttvnsvmnfirnldsetgamvrlled > 5u91_B interface=26,27,29,30,33,72,73,75,76,79,80,83,187,227,229,230,243,245,248,268, padatsdevrknlmdvfrdrpafseHTwEMllSvcrswaawcklnnrkwfpaepedvrdyllhlqarglavKTiQQhlCRlnMlhrrsglprpsdsnavslvmrrirkenvdagertkqalafertdfdqvrslmensdrcqdirnlaflgvayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRRygvaapsatsqlStYalQrifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwttvnsvmnfirnldsetgamvrlled
interface signature	HTMSKTQRRRRYSYQR/HTEMSKTQQCRMKRRRSYQR

Estimated binding specificities ?

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# IC=28.047 IC/col=0.850 n_of_columns=33

specificity:

A |   0  78  24  24  96   0   2   6   0  96   0   0  96   6  90  24  24  24  24  68   0  96   0   0   0   0  96  78  24  24  10   0   2
C |  96   6  24  24   0   0  90  76   0   0   0   0   0  78   2  24  24  24  24  10   0   0   0   0  96  96   0   6  24  24  12   0   2
G |   0   6  24  24   0   0   2   6   0   0   0   0   0   6   2  24  24  24  24   8   0   0   0  96   0   0   0   6  24  24   8  96  90
T |   0   6  24  24   0  96   2   8  96   0  96  96   0   6   2  24  24  24  24  10  96   0  96   0   0   0   0   6  24  24  66   0   2

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updated Tue Sep 10 08:50:20 2024