5u91_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TRE/LOXLTR COMPLEX
reference	Karpinski et al. 'Nucleic 45 9726 2017
source	synthetic construct
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	5u91_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5u91_E interface=25,26,29,32,71,72,75,79,226,228,229,242,244,245,247,248,267, alpaddevrknlmdvfrdrpafseHTweMllSvcrswaawcklnnrkwfpaepedvrdyllhlqarglavKTiqQhlcRlnmlhrrsglprpsdsnavslvmrrirkenvdagertkqalafertdfdqvrslmensdrcqdirnlaflgvayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRRygvaapsatsqlStYAlQRifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwttvnsvmnfirnldsetgamvrlled > 5u91_F interface=19,20,22,23,26,65,66,68,69,72,73,180,220,222,223,224,236,238,241,261, evrknlmdvfrdrpafseHTwEMllSvcrswaawcklnnrkwfpaepedvrdyllhlqarglavKTiQQhlCRlnmlhrrsglprpsdsnavslvmrrirkenvdagertkqalafertdfdqvrslmensdrcqdirnlaflgvayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRRYgvaapsatsqlStYalQrifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwttvnsvmnfirnldsetgamvrlled
interface signature	HTMSKTQRRRRSYAQRR/HTEMSKTQQCRKRRRYSYQR

Estimated binding specificities ?

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# IC=33.112 IC/col=0.974 n_of_columns=34

specificity:

A |   0  90   3   3   0   0   0   0   0  96   0  96   0  24  24  24  24   6   3   0  96  96   0  96   0   0  96   7  24  11   4   0   1   1
C |  96   1   5  14   0   0   0   0  96   0   0   0   0  24  24  24  24   3   6   0   0   0   0   0   0   0   0   5  24  13   5   0   3  90
G |   0   4   6  72   0   0  96  96   0   0   0   0   0  24  24  24  24   5  84   0   0   0   0   0  96  96   0  11  24  13   5  96   5   4
T |   0   1  82   7  96  96   0   0   0   0  96   0  96  24  24  24  24  82   3  96   0   0  96   0   0   0   0  73  24  59  82   0  87   1

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updated Sat Dec 14 07:20:18 2024