5v0q_A : 3D-footprint complex

structure name	ORIGINAL ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE TARGETING THE HIV INTEGRASE GENE; HARBORS 49 POINT MUTATIONS RELATIVE TO WILD-TYPE I- ONUI (I-ONUI_E-VHIVINT_V1)
reference	Lambert et al. 'Protein 30 503 2017
source	SYNTHETIC CONSTRUCT
experiment	X-ray (resolution=2.40, R-factor=0.190)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
reference complex	5t8d_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5v0q_A interface=18,22,24,26,32,34,36,38,58,60,62,66,68,70,170,174,176,180,185,187,189,191,193,215,217,219,222,224,226,230, resinpwiltgfadaegSfglYiYnRnryttRlRfTiTlhnkdksileniqstwkvgIiTnNgdnAvSlHvsrfedlkviidhfekyplitqklgdyklfkqafsvmenkehlkengikelvrikakmnwgltdelkkafpgnisrerplinknipnfkwlagftsgegHfgvElIknsRnsrvHvRlRfEiAqhvrdknlmnslitylgcgyiYeQnYseRsWlRfsvSkfsdindkiipvfqentligvkledfedwckvaklieekkhltesgldeikkiklnmnkgr
interface signature	SYYRRRTTITNASHHEIRHRREAYQYRWRS

Estimated binding specificities ?

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# IC=20.606 IC/col=1.030 n_of_columns=20

specificity:

A |   0   0   0   0  96   0  54  96  24  18   0  81   0   0   0  96   0  96  60   9
C |   0   0   0  87   0   0  27   0  24   9  96   3   0  96  96   0  96   0  12   9
G |   0  96  96   0   0  96   6   0  24   6   0   6   0   0   0   0   0   0  12   9
T |  96   0   0   9   0   0   9   0  24  63   0   6  96   0   0   0   0   0  12  69

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updated Thu Sep 12 22:07:33 2024