5v3m_C : 3D-footprint complex

structure name	MOUSEZFP568-ZNF1-11 IN COMPLEX WITH DNA (Zinc finger protein 568)
reference	Patel et al. Cell 173 221 2018
source	Mus musculus
experiment	X-ray (resolution=2.09, R-factor=0.215)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5v3j_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5v3m_C interface=69,71,72,75,97,98,99,125,127,128,131,152,153,155,156,159,181,184,187,209,210,211,212,215,237,240,265,267,268,271, phkckecgkafhtpsqlshhqklhvgekpykcqecgkafpsnaqlslhhrvhtdekcfeckecgkafmRpSHllRhqrihtgekphkckecgkafrYDTqlslhllthagarrfeckdcdkvysCaSQlaLhqmshtgekphkckecgkgfISdSHllRhqsvhtgetpykckecgkgfrRgsElaRhqrahsgdkpykckecgksftCTTElfRhqkvhtgdrphkckecgkafiRrsElthhershsgekpyeckecgktfgRgSElsRhqkiht
interface signature	RSHRYDTCSQLISSHRRERCTTERRERSER

Estimated binding specificities ?

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# IC=25.391 IC/col=1.104 n_of_columns=23

specificity:

A |   0  14   0   0   0   4  24   8   0  96   0   0   0   0   0   0   0   0  92   0   0   0   4
C |   0  62  96  96   0  58  24  18   0   0  96  96   0   0   0   0  96  96   0  96   0  96  79
G |  96   8   0   0   0   9  24  12   0   0   0   0   0  96   0  92   0   0   0   0  96   0   8
T |   0  12   0   0  96  25  24  58  96   0   0   0  96   0  96   4   0   0   4   0   0   0   5

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updated Tue Dec 17 02:38:35 2024