5v3m_C : 3D-footprint complex

structure name	MOUSEZFP568-ZNF1-11 IN COMPLEX WITH DNA (Zinc finger protein 568)
reference	Patel et al. Cell 173 221 2018
source	Mus musculus
experiment	X-ray (resolution=2.09, R-factor=0.215)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5v3j_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5v3m_C interface=69,71,72,75,97,98,99,125,127,128,131,152,153,155,156,159,181,184,187,209,210,211,212,215,237,240,265,267,268,271, phkckecgkafhtpsqlshhqklhvgekpykcqecgkafpsnaqlslhhrvhtdekcfeckecgkafmRpSHllRhqrihtgekphkckecgkafrYDTqlslhllthagarrfeckdcdkvysCaSQlaLhqmshtgekphkckecgkgfISdSHllRhqsvhtgetpykckecgkgfrRgsElaRhqrahsgdkpykckecgksftCTTElfRhqkvhtgdrphkckecgkafiRrsElthhershsgekpyeckecgktfgRgSElsRhqkiht
interface signature	RSHRYDTCSQLISSHRRERCTTERRERSER

Estimated binding specificities ?

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# IC=25.857 IC/col=1.124 n_of_columns=23

specificity:

A |  12   0   0   0   6   0   0   6  90   0  96   0   0   0  96  84  24  18  96   0   0   6   0
C |   6   0  96   0   0   0   0  90   0  96   0   0   0   0   0   0  24   6   0   0   0   6  96
G |  72  96   0  96   0  96  96   0   6   0   0  96  96   0   0   0  24  66   0  96  96  72   0
T |   6   0   0   0  90   0   0   0   0   0   0   0   0  96   0  12  24   6   0   0   0  12   0

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updated Thu Sep 12 22:08:00 2024