5vfx_BC : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	5vfx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_B interface=27,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaedrfnkRiKidgeNmYavvikyssysilkrlyl > 5vfx_C interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RRKNY/RDRRKNY

Estimated binding specificities ?

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# IC=17.577 IC/col=0.977 n_of_columns=18

specificity:

A |  74  15   0  48  46   0   3  24   3  62   3  96   0   0   0  96  96   0
C |  12   0   0   0   0  96   8  24   5   9  76   0   0   0   0   0   0  96
G |   9  81  96   0  50   0   5  24   5  24  11   0  96  96  96   0   0   0
T |   1   0   0  48   0   0  80  24  83   1   6   0   0   0   0   0   0   0

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updated Mon Jan 5 22:39:16 2026