5vfx_BC : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	5vfx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_B interface=27,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaedrfnkRiKidgeNmYavvikyssysilkrlyl > 5vfx_C interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RRKNY/RDRRKNY

Estimated binding specificities ?

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# IC=17.229 IC/col=0.957 n_of_columns=18

specificity:

A |   0   0   0   0   0   0   0   7   5  84  24  82   0   0  36   0   0   1
C |   0   0   0  96  96  96   0  15  17   6  24   5   0  24   1  96  88  11
G |  96   0   0   0   0   0   0  63  19   5  24   3  96   5   0   0   1  11
T |   0  96  96   0   0   0  96  11  55   1  24   6   0  67  59   0   7  73

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updated Thu Jun 25 09:52:57 2026