5vfx_A : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA (TCPK)
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=0.200)
structural superfamily	Ribonuclease H-like;
multimeric complexes	5vfx_BC 5vfx_FG
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_A interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RDRRKNY

Estimated binding specificities ?

readout + contact

# IC=8.850 IC/col=1.106 n_of_columns=8

specificity:

A |  38   0   0   0   0   0   0   0
C |  20   0  19   0  96  96  96   0
G |  19  96   1   0   0   0   0   0
T |  19   0  76  96   0   0   0  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  DCKT--RGYA----KA   L       +-----------------------------5jvt_A    
                           +-1 
  ------RGNT------   L   +-2 +-----------------------------8smh_F    
                         ! ! 
  NASTRGHT--STFT--   L --3 +-----------------------------1vtn_C    
                         ! 
  DCKT--RGYA------   L   +-----------------------------4bnc_A

home
updated Mon Jun 29 21:17:44 2026