5vfx_A : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA (TCPK)
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=0.200)
structural superfamily	Ribonuclease H-like;
multimeric complexes	5vfx_BC 5vfx_FG
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_A interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RDRRKNY

Estimated binding specificities ?

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# IC=8.899 IC/col=1.112 n_of_columns=8

specificity:

A |  96   0   0   0  96  77   0  19
C |   0   0   0   0   0   0  96  19
G |   0  96  96  96   0  19   0  20
T |   0   0   0   0   0   0   0  38

scan!

Dendrogram of similar interfaces ?

matrix format

  
  DCKT--RGYA----KA   L                                  +5jvt_A    
                           +----------------------------1 
  DCKT--RGYA------   L   +-2                            +4bnc_A    
                         ! ! 
  ------RGNT------   L --3 +-----------------------------8smh_F    
                         ! 
  NASTRGHT--STFT--   L   +-----------------------------1vtn_C

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updated Sat Jan 10 09:04:25 2026