5vfx_FG : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	5vfx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_F interface=27,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaedRfnkRiKidgeNmYavvikyssysilkrlyle > 5vfx_G interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RRRKNY/RDRRKNY

Estimated binding specificities ?

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# IC=21.531 IC/col=1.077 n_of_columns=20

specificity:

A |  84  81   0   0  96  96   0   9  24   9  96   9  96   0   0   0  96  96   0   0
C |   4   7   0   0   0   0  96   9  24   9   0  62   0   0   0   0   0   0  96   0
G |   4   4  96  96   0   0   0   9  24  11   0  14   0  96  96  96   0   0   0   0
T |   4   4   0   0   0   0   0  69  24  67   0  11   0   0   0   0   0   0   0  96

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updated Mon Jan 5 22:39:29 2026